Class BiopaxEntity

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Instance Methods

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_identity(a)

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_entrez_funct(a)

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_reactome_funct(a)

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__init__(self, XMLNode)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature

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set_attributes(self, XMLNode)

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_get_biana_object(self)

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toBiana(self)
Add general attributes to external entity and adds it to the database

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Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

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resources = None

controlled_relations = None

database = None

dbaccess = None

_not_recognized = Set([])

datatype_to_biana_type = {'chebi': 'CHEBI', 'compound': 'keggC...

datatype_operations = {}

x = 'tigr'

Properties

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Inherited from object: __class__

Method Details

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init(self, XMLNode)
(Constructor)

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x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__: (inherited documentation)

toBiana(self)

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Add general attributes to external entity and adds it to the database

returns the external entity id assigned to it

Class Variable Details

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datatype_to_biana_type

Value:

{'chebi': 'CHEBI',
 'compound': 'keggCode',
 'embl': 'AccessionNumber',
 'ensembl': 'ensembl',
 'entrez': 'refseq',
 'flybase': 'flybase',
 'glycan': 'keggCode',
 'go': 'GO',
...

Class BiopaxEntity

__init__(self, XMLNode) (Constructor)

toBiana(self)

datatype_to_biana_type

init(self, XMLNode)
(Constructor)