Class CogParser

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COG Parser Class

Instance Methods

[hide private]

__init__(self)
Starts the bianaParser Object

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parse_database(self)
Method to be overwritten by specific parsers

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Inherited from bianaParser.BianaParser: add_to_log, close, get_log_string, initialize_input_file_descriptor, parseArguments, print_help, start

Inherited from bianaParser.BianaParser (private): _indent, _splitsize

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

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name = 'cog'

description = 'Clusters of Orthologous Groups of proteins (COGs)'

external_entity_definition = 'An element in a COG'

external_entity_relations = 'A COG'

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self)
(Constructor)

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Starts the bianaParser Object

Overrides: object.__init__: (inherited documentation)

parse_database(self)

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Method to be overwritten by specific parsers

The method must include the calls to control lock and unlock database procedures

Overrides: bianaParser.BianaParser.parse_database: (inherited documentation)

Class CogParser

__init__(self) (Constructor)

parse_database(self)

init(self)
(Constructor)