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BIANA
Package biana :: Package BianaParser :: Module nrParser :: Class NrParser
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Class NrParser

source code

NCBI nr Parser Class

Instance Methods [hide private]
 
__init__(self)
Starts the bianaParser Object		 source code
 
parse_database(self)
Method that implements the specific operations of nr parser		 source code
 
parse_nr_record(self, header_line, sequence) source code

Inherited from bianaParser.BianaParser: add_to_log, close, get_log_string, initialize_input_file_descriptor, parseArguments, print_help, start

Inherited from bianaParser.BianaParser (private): _indent, _splitsize

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables [hide private]
  name = 'nr'
  description = 'This file implements a program that fills up ta...
  external_entity_definition = 'A external entity represents a p...
  external_entity_relations = ''
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self)
(Constructor)

source code 

Starts the bianaParser Object

Overrides: object.__init__
(inherited documentation)

parse_database(self)

source code 

Method that implements the specific operations of nr parser

Overrides: bianaParser.BianaParser.parse_database

Class Variable Details [hide private]

description

Value:
'This file implements a program that fills up tables in BIANA database\
 with information from nr'

external_entity_definition

Value:
'A external entity represents a protein'

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BIANA
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