PDB: 1bry Compound: bryodin i Classification: RIBOSOME-INACTIVATING PROTEIN Entry date in PDB: 1998-03-04 Resolution [Å]: 2.10 R-Factor: 0.237

CHAIN: Y SWISS-PROT/TREMBL: P33185    KEYWORD: 3D-structure    Glycoprotein    Hydrolase    Multigene family    Plant defense    Protein synthesis inhibitor    Signal    Toxin    EC: 3.2.2.22 SCOP: d.165.1.1 Alpha and beta proteins (a+b)    Ribosome inactivating proteins (RIP)    Ribosome inactivating proteins (RIP)    Plant cytotoxins    Bryodin    Red briony (Bryonia dioica) GO:  rRNA N-glycosylase activity    negative regulation of protein biosynthesis    CHAIN: Z SWISS-PROT/TREMBL: P33185    KEYWORD: 3D-structure    Glycoprotein    Hydrolase    Multigene family    Plant defense    Protein synthesis inhibitor    Signal    Toxin    EC: 3.2.2.22 SCOP: d.165.1.1 Alpha and beta proteins (a+b)    Ribosome inactivating proteins (RIP)    Ribosome inactivating proteins (RIP)    Plant cytotoxins    Bryodin    Red briony (Bryonia dioica) GO:  rRNA N-glycosylase activity    negative regulation of protein biosynthesis

Image Source: PDB

Loops in ArchDB-EC clusters

1bry_Y_165 - HH => SUBCLASS : 9.6.1

Loops not clustered in ArchDB

1bry_Y_34 - AR
1bry_Y_2 - EH
1bry_Y_79 - EH
1bry_Y_101 - EH
1bry_Y_222 - EH
1bry_Y_70 - HA
1bry_Y_59 - HA
1bry_Y_47 - HA
1bry_Y_27 - HA
1bry_Y_208 - HA
1bry_Y_192 - HE
1bry_Y_86 - HE
1bry_Y_11 - HE
1bry_Y_144 - HH
1bry_Y_183 - HH
1bry_Y_111 - HH
1bry_Y_129 - HH

1aha - - percentage of sequence identity: 67
1ahb - - percentage of sequence identity: 67
1ahc - - percentage of sequence identity: 67
1bry Y - percentage of sequence identity: 100
1bry Z - percentage of sequence identity: 100
1cf5 A - percentage of sequence identity: 60
1cf5 B - percentage of sequence identity: 60
1d8v A - percentage of sequence identity: 60
1f8q A - percentage of sequence identity: 66
1gis A - percentage of sequence identity: 85
1giu A - percentage of sequence identity: 85
1j4g A - percentage of sequence identity: 86
1j4g B - percentage of sequence identity: 86
1j4g C - percentage of sequence identity: 86
1j4g D - percentage of sequence identity: 86
1mom - - percentage of sequence identity: 67
1mrg - - percentage of sequence identity: 66
1mrh - - percentage of sequence identity: 66
1mri - - percentage of sequence identity: 66
1mrj - - percentage of sequence identity: 86
1mrk - - percentage of sequence identity: 86
1nio A - percentage of sequence identity: 60
1nli A - percentage of sequence identity: 85
1qd2 A - percentage of sequence identity: 86
1tcs - - percentage of sequence identity: 86