ArchDB - Biological DataBase of Protein Loops

Information on 1cxq

PDB: 1cxq
Compound: avian sarcoma virus integrase
Classification: TRANSFERASE
Entry date in PDB: 1999-09-08
Resolution [Å]: 1.02
R-Factor: 0.129

CHAIN: A

SWISS-PROT/TREMBL: P03354
   KEYWORD: 3D-structure    Endonuclease    Hydrolase    Metal-binding    Nuclease    Polyprotein    RNA-directed DNA polymerase    Transferase    Zinc    Zinc-finger
EC: 2.7.7.49
SCOP: c.55.3.2 Alpha and beta proteins (a/b)    Ribonuclease H-like motif    Ribonuclease H-like    Retroviral integrase, catalytic domain    Retroviral integrase, catalytic domain    Rous sarcoma virus (RSV, avian sarcoma virus)
GO:  DNA binding    integrase activity    nucleic acid binding    ribonuclease H activity    RNA binding    RNA-directed DNA polymerase activity    zinc ion binding    DNA integration    DNA recombination    RNA-dependent DNA replication

Image Source: PDB

Stored Loops of 1cxq

Loops in ArchDB40 clusters

1cxq_A_129 - HE => SUBCLASS : 1.1.1
1cxq_A_76 - HA => SUBCLASS : 4.1.2
1cxq_A_88 - EH => SUBCLASS : 4.11.9
1cxq_A_124 - HH => SUBCLASS : 1.1.7

Loops in ArchDB95 clusters

1cxq_A_129 - HE => SUBCLASS : 1.1.1
1cxq_A_76 - HA => SUBCLASS : 4.1.2

Loops in ArchDB-EC clusters

1cxq_A_124 - HH => SUBCLASS : 1.1.2

Loops not clustered in ArchDB

1cxq_A_117 - EH
1cxq_A_141 - EH
1cxq_A_60 - HA
1cxq_A_60 - HA
1cxq_A_76 - HA
1cxq_A_98 - HE
1cxq_A_154 - HH

Homologous structures to 1cxq classified in ArchDB

1a5v - - percentage of sequence identity: 100
1a5w - - percentage of sequence identity: 100
1a5x - - percentage of sequence identity: 100
1asu - - percentage of sequence identity: 99
1asv - - percentage of sequence identity: 99
1asw - - percentage of sequence identity: 99
1c0m A - percentage of sequence identity: 98
1c0m B - percentage of sequence identity: 98
1c0m C - percentage of sequence identity: 98
1c0m D - percentage of sequence identity: 98
1c1a A - percentage of sequence identity: 98
1c1a B - percentage of sequence identity: 98
1cxu A - percentage of sequence identity: 100
1cz9 A - percentage of sequence identity: 99
1czb A - percentage of sequence identity: 100
1vsd - - percentage of sequence identity: 98
1vse - - percentage of sequence identity: 98
1vsf - - percentage of sequence identity: 98
1vsh - - percentage of sequence identity: 98
1vsi - - percentage of sequence identity: 98
1vsj - - percentage of sequence identity: 98
1vsk - - percentage of sequence identity: 99
1vsl A - percentage of sequence identity: 99
1vsm A - percentage of sequence identity: 100