PDB: 1fo0 Compound: allogeneic h-2kb mhc class i molecule Classification: IMMUNE SYSTEM Entry date in PDB: 2000-10-02 Resolution [Å]: 2.50 R-Factor: 0.218

CHAIN: H SWISS-PROT/TREMBL: P01901    KEYWORD: 3D-structure    Glycoprotein    MHC I    Signal    Transmembrane    3D-structure    Glycoprotein    MHC I    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class I MHC, alpha-3 domain    Mouse (Mus musculus) SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class I MHC, alpha-1 and alpha-2 domains    Mouse (Mus musculus), H-2KB GO:  MHC class I protein complex    MHC class I receptor activity    antigen presentation    CHAIN: L SWISS-PROT/TREMBL: P01887    KEYWORD: 3D-structure    Immunoglobulin domain    MHC I    Polymorphism    Signal    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    beta2-microglobulin    Mouse (Mus musculus) GO:

Image Source: PDB

Loops in ArchDB40 clusters

1fo0_B_63 - HA => SUBCLASS : 2.2.1
1fo0_A_58 - HA => SUBCLASS : 2.3.11
1fo0_B_31 - HA => SUBCLASS : 3.1.1
1fo0_A_31 - HA => SUBCLASS : 3.1.1
1fo0_A_62 - HA => SUBCLASS : 4.1.1
1fo0_A_104 - AR => SUBCLASS : 3.12.1
1fo0_B_107 - AR => SUBCLASS : 3.12.1
1fo0_A_9 - AR => SUBCLASS : 4.1.1
1fo0_B_10 - AR => SUBCLASS : 4.10.1
1fo0_B_43 - AR => SUBCLASS : 4.28.1
1fo0_B_19 - AR => SUBCLASS : 6.8.1
1fo0_B_10 - AR => SUBCLASS : 6.16.1
1fo0_A_72 - AR => SUBCLASS : 8.6.1

Loops in ArchDB95 clusters

1fo0_A_3 - AR => SUBCLASS : 3.4.3
1fo0_B_10 - AR => SUBCLASS : 3.10.3
1fo0_B_107 - AR => SUBCLASS : 3.12.1
1fo0_A_9 - AR => SUBCLASS : 4.1.1
1fo0_B_43 - AR => SUBCLASS : 4.27.1
1fo0_B_10 - AR => SUBCLASS : 5.11.1
1fo0_B_19 - AR => SUBCLASS : 6.4.1
1fo0_A_72 - AR => SUBCLASS : 7.1.1
1fo0_B_63 - HA => SUBCLASS : 2.2.1
1fo0_A_58 - HA => SUBCLASS : 2.3.4
1fo0_A_31 - HA => SUBCLASS : 3.1.1
1fo0_B_31 - HA => SUBCLASS : 3.1.1
1fo0_A_62 - HA => SUBCLASS : 4.1.1
1fo0_A_62 - HA => SUBCLASS : 4.1.6

Loops not clustered in ArchDB

1fo0_A_18 - AR
1fo0_A_23 - AR
1fo0_A_43 - AR
1fo0_B_4 - AR
1fo0_B_74 - AR
1fo0_A_86 - HA
1fo0_B_55 - HA
1fo0_B_86 - HA

1a1n A - percentage of sequence identity: 70
1agd A - percentage of sequence identity: 72
1bmg - - percentage of sequence identity: 67
1e27 A - percentage of sequence identity: 71
1hsb A - percentage of sequence identity: 71
1i4f A - percentage of sequence identity: 72
1juf A - percentage of sequence identity: 84
1k5n A - percentage of sequence identity: 72
1k8d A - percentage of sequence identity: 81
1kb5 B - percentage of sequence identity: 89
1kj2 B - percentage of sequence identity: 89
1kj2 E - percentage of sequence identity: 89
1kjv A - percentage of sequence identity: 78
1ld9 A - percentage of sequence identity: 85
1lk2 A - percentage of sequence identity: 100
1m6o A - percentage of sequence identity: 72
1mhc A - percentage of sequence identity: 66
1nam B - percentage of sequence identity: 100