PDB: 1gd1 Compound: holo-D-Glyceraldehyde-3-phosphate dehydrogenase Classification: OXIDOREDUCTASE(ALDEHYDE(D)-NAD(A)) Entry date in PDB: 1988-01-16 Resolution [Å]: 1.80 R-Factor: 0.177

CHAIN: O SWISS-PROT/TREMBL: P00362    KEYWORD: 3D-structure    Glycolysis    NAD    Oxidoreductase    EC: 1.2.1.12 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 SCOP: d.81.1.1 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    GAPDH-like    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 GO:  cytoplasm    glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase activity    NAD binding    glucose metabolism    glycolysis    CHAIN: P SWISS-PROT/TREMBL: P00362    KEYWORD: 3D-structure    Glycolysis    NAD    Oxidoreductase    EC: 1.2.1.12 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 SCOP: d.81.1.1 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    GAPDH-like    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 GO:  cytoplasm    glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase activity    NAD binding    glucose metabolism    glycolysis    CHAIN: Q SWISS-PROT/TREMBL: P00362    KEYWORD: 3D-structure    Glycolysis    NAD    Oxidoreductase    EC: 1.2.1.12 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 SCOP: d.81.1.1 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    GAPDH-like    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 GO:  cytoplasm    glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase activity    NAD binding    glucose metabolism    glycolysis    CHAIN: R SWISS-PROT/TREMBL: P00362    KEYWORD: 3D-structure    Glycolysis    NAD    Oxidoreductase    EC: 1.2.1.12 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 SCOP: c.2.1.3 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 SCOP: d.81.1.1 Alpha and beta proteins (a+b)    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain    GAPDH-like    Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)    Bacillus stearothermophilus, nca 1503 GO:  cytoplasm    glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity    glyceraldehyde-3-phosphate dehydrogenase activity    NAD binding    glucose metabolism    glycolysis

Image Source: PDB

Loops in ArchDB95 clusters

1gd1_O_1 - EH => SUBCLASS : 3.39.1
1gd1_O_238 - EH => SUBCLASS : 5.10.1
1gd1_O_91 - EH => SUBCLASS : 7.10.1
1gd1_O_290 - AR => SUBCLASS : 3.2.3
1gd1_O_225 - AR => SUBCLASS : 5.79.1
1gd1_O_115 - AR => SUBCLASS : 8.31.1
1gd1_O_167 - AR => SUBCLASS : 25.1.1
1gd1_O_107 - HE => SUBCLASS : 3.1.1
1gd1_O_10 - HE => SUBCLASS : 3.4.1
1gd1_O_10 - HE => SUBCLASS : 3.4.5
1gd1_O_252 - HE => SUBCLASS : 6.11.1
1gd1_O_57 - HA => SUBCLASS : 2.3.1
1gd1_O_45 - HA => SUBCLASS : 3.3.5
1gd1_O_298 - HA => SUBCLASS : 3.4.1

Loops in ArchDB-EC clusters

1gd1_O_252 - HE => SUBCLASS : 6.8.1

Loops not clustered in ArchDB

1gd1_O_115 - AR
1gd1_O_167 - AR
1gd1_O_69 - AR
1gd1_O_69 - AR
1gd1_O_51 - AR
1gd1_O_225 - AR
1gd1_O_51 - AR
1gd1_O_290 - AR
1gd1_O_304 - EH
1gd1_O_143 - EH
1gd1_O_25 - EH
1gd1_O_126 - HA
1gd1_O_204 - HA
1gd1_O_271 - HA
1gd1_O_63 - HA
1gd1_O_57 - HA
1gd1_O_63 - HA
1gd1_O_126 - HA
1gd1_O_204 - HA
1gd1_O_271 - HA
1gd1_O_45 - HA
1gd1_O_298 - HA
1gd1_O_149 - HE
1gd1_O_37 - HE
1gd1_O_102 - HH

1cer A - percentage of sequence identity: 62
1cer B - percentage of sequence identity: 62
1cer C - percentage of sequence identity: 62
1cer D - percentage of sequence identity: 62
1cer O - percentage of sequence identity: 62
1cer P - percentage of sequence identity: 62
1cer Q - percentage of sequence identity: 62
1cer R - percentage of sequence identity: 62
1dbv O - percentage of sequence identity: 99
1dbv P - percentage of sequence identity: 99
1dbv Q - percentage of sequence identity: 99
1dbv R - percentage of sequence identity: 99
1gd1 O - percentage of sequence identity: 100
1gd1 P - percentage of sequence identity: 100
1gd1 Q - percentage of sequence identity: 100
1gd1 R - percentage of sequence identity: 100
1hdg O - percentage of sequence identity: 67
1hdg Q - percentage of sequence identity: 67
1npt O - percentage of sequence identity: 99
1npt P - percentage of sequence identity: 99
1npt Q - percentage of sequence identity: 99
1npt R - percentage of sequence identity: 99
1nq5 A - percentage of sequence identity: 99
1nq5 C - percentage of sequence identity: 99
1nq5 O - percentage of sequence identity: 99
1nq5 Q - percentage of sequence identity: 99
1nqa O - percentage of sequence identity: 99
1nqa P - percentage of sequence identity: 99
1nqa Q - percentage of sequence identity: 99
1nqa R - percentage of sequence identity: 99
1nqo A - percentage of sequence identity: 99
1nqo C - percentage of sequence identity: 99
1nqo O - percentage of sequence identity: 99
1nqo Q - percentage of sequence identity: 99
1vc2 A - percentage of sequence identity: 63
2dbv O - percentage of sequence identity: 99
2dbv P - percentage of sequence identity: 99
2dbv Q - percentage of sequence identity: 99
2dbv R - percentage of sequence identity: 99
2gd1 O - percentage of sequence identity: 100
2gd1 P - percentage of sequence identity: 100
2gd1 Q - percentage of sequence identity: 100
2gd1 R - percentage of sequence identity: 100
3dbv O - percentage of sequence identity: 98
3dbv P - percentage of sequence identity: 98
3dbv Q - percentage of sequence identity: 98
3dbv R - percentage of sequence identity: 98
4dbv O - percentage of sequence identity: 98
4dbv P - percentage of sequence identity: 98
4dbv Q - percentage of sequence identity: 98
4dbv R - percentage of sequence identity: 98