PDB: 1li1 Compound: collagen alpha 1(iv) Classification: STRUCTURAL PROTEIN Entry date in PDB: 2002-05-22 Resolution [Å]: 1.90 R-Factor: 0.182

CHAIN: A SWISS-PROT/TREMBL: P02462    KEYWORD: 3D-structure    Basement membrane    Collagen    Connective tissue    Extracellular matrix    Glycoprotein    Hydroxylation    Repeat    Signal    SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) GO:  collagen    cytoplasm    extracellular matrix structural constituent    phosphate transport    CHAIN: B SWISS-PROT/TREMBL: P02462    KEYWORD: 3D-structure    Basement membrane    Collagen    Connective tissue    Extracellular matrix    Glycoprotein    Hydroxylation    Repeat    Signal    SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) GO:  collagen    cytoplasm    extracellular matrix structural constituent    phosphate transport    CHAIN: C SWISS-PROT/TREMBL: P08572    KEYWORD: 3D-structure    Basement membrane    Collagen    Connective tissue    Extracellular matrix    Glycoprotein    Hydroxylation    Repeat    Signal    SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) GO:  collagen    cytoplasm    extracellular matrix structural constituent    phosphate transport    CHAIN: D SWISS-PROT/TREMBL: P02462    KEYWORD: 3D-structure    Basement membrane    Collagen    Connective tissue    Extracellular matrix    Glycoprotein    Hydroxylation    Repeat    Signal    SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) GO:  collagen    cytoplasm    extracellular matrix structural constituent    phosphate transport    CHAIN: E SWISS-PROT/TREMBL: P02462    KEYWORD: 3D-structure    Basement membrane    Collagen    Connective tissue    Extracellular matrix    Glycoprotein    Hydroxylation    Repeat    Signal    SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) GO:  collagen    cytoplasm    extracellular matrix structural constituent    phosphate transport    CHAIN: F SWISS-PROT/TREMBL: P08572    KEYWORD: 3D-structure    Basement membrane    Collagen    Connective tissue    Extracellular matrix    Glycoprotein    Hydroxylation    Repeat    Signal    SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) SCOP: d.169.1.6 Alpha and beta proteins (a+b)    C-type lectin-like    C-type lectin-like    Noncollagenous (NC1) domain of collagen IV    Noncollagenous (NC1) domain of collagen IV    Human (Homo sapiens) GO:  collagen    cytoplasm    extracellular matrix structural constituent    phosphate transport

Image Source: PDB

Loops in ArchDB40 clusters

1li1_A_25 - HA => SUBCLASS : 2.4.11
1li1_A_173 - HA => SUBCLASS : 3.1.1
1li1_A_63 - HA => SUBCLASS : 3.1.1
1li1_A_107 - AR => SUBCLASS : 1.1.2
1li1_A_107 - AR => SUBCLASS : 3.2.4
1li1_A_181 - AR => SUBCLASS : 3.7.4

Loops in ArchDB95 clusters

1li1_A_107 - AR => SUBCLASS : 3.1.9
1li1_C_181 - AR => SUBCLASS : 3.11.2
1li1_A_181 - AR => SUBCLASS : 3.11.2
1li1_C_153 - AR => SUBCLASS : 7.25.1
1li1_C_41 - AR => SUBCLASS : 7.25.1
1li1_A_153 - AR => SUBCLASS : 7.25.1
1li1_A_41 - AR => SUBCLASS : 7.25.1
1li1_C_6 - AR => SUBCLASS : 12.7.1
1li1_A_117 - AR => SUBCLASS : 12.7.1
1li1_A_6 - AR => SUBCLASS : 12.7.1
1li1_C_117 - AR => SUBCLASS : 12.7.1
1li1_C_25 - HA => SUBCLASS : 2.5.9
1li1_A_25 - HA => SUBCLASS : 2.5.9
1li1_C_63 - HA => SUBCLASS : 3.1.1
1li1_A_173 - HA => SUBCLASS : 3.1.1
1li1_A_63 - HA => SUBCLASS : 3.1.1
1li1_C_173 - HA => SUBCLASS : 4.1.1

Loops not clustered in ArchDB

1li1_A_53 - AR
1li1_C_164 - AR
1li1_C_107 - AR
1li1_C_96 - AR
1li1_C_79 - AR
1li1_C_70 - AR
1li1_C_53 - AR
1li1_A_189 - AR
1li1_A_164 - AR
1li1_A_96 - AR
1li1_A_79 - AR
1li1_A_71 - AR
1li1_C_189 - AR
1li1_A_134 - HA
1li1_C_134 - HA

1li1 A - percentage of sequence identity: 63
1li1 B - percentage of sequence identity: 100
1li1 C - percentage of sequence identity: 63
1li1 D - percentage of sequence identity: 100
1li1 E - percentage of sequence identity: 100
1li1 F - percentage of sequence identity: 63
1m3d A - percentage of sequence identity: 98
1m3d B - percentage of sequence identity: 98
1m3d C - percentage of sequence identity: 64
1m3d D - percentage of sequence identity: 98
1m3d E - percentage of sequence identity: 98
1m3d F - percentage of sequence identity: 64
1m3d G - percentage of sequence identity: 98
1m3d H - percentage of sequence identity: 98
1m3d I - percentage of sequence identity: 64
1m3d J - percentage of sequence identity: 98
1m3d K - percentage of sequence identity: 98
1m3d L - percentage of sequence identity: 64
1t60 A - percentage of sequence identity: 98
1t60 B - percentage of sequence identity: 98
1t60 C - percentage of sequence identity: 64
1t60 D - percentage of sequence identity: 98
1t60 E - percentage of sequence identity: 98
1t60 F - percentage of sequence identity: 64
1t60 G - percentage of sequence identity: 98
1t60 H - percentage of sequence identity: 98
1t60 I - percentage of sequence identity: 64
1t60 J - percentage of sequence identity: 98
1t60 K - percentage of sequence identity: 98
1t60 L - percentage of sequence identity: 64
1t60 M - percentage of sequence identity: 98
1t60 N - percentage of sequence identity: 98
1t60 O - percentage of sequence identity: 64
1t60 P - percentage of sequence identity: 98
1t60 Q - percentage of sequence identity: 98
1t60 R - percentage of sequence identity: 64
1t60 S - percentage of sequence identity: 98
1t60 T - percentage of sequence identity: 98
1t60 U - percentage of sequence identity: 64
1t60 V - percentage of sequence identity: 98
1t60 W - percentage of sequence identity: 98
1t60 X - percentage of sequence identity: 64
1t61 A - percentage of sequence identity: 98
1t61 B - percentage of sequence identity: 98
1t61 C - percentage of sequence identity: 64
1t61 D - percentage of sequence identity: 98
1t61 E - percentage of sequence identity: 98
1t61 F - percentage of sequence identity: 64