PDB: 1npp Compound: transcription antitermination protein nusg Classification: TRANSCRIPTION Entry date in PDB: 2003-03-11 Resolution [Å]: 2.00 R-Factor: 0.219

CHAIN: A SWISS-PROT/TREMBL: O67757    KEYWORD: 3D-structure    Complete proteome    Transcription antitermination    Transcription termination    SCOP: b.114.1.1 All beta proteins    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    Aquifex aeolicus SCOP: b.34.5.4 All beta proteins    SH3-like barrel    Translation proteins SH3-like domain    N-utilization substance G protein NusG, C-terminal domain    N-utilization substance G protein NusG, C-terminal domain    Aquifex aeolicus SCOP: d.58.42.1 Alpha and beta proteins (a+b)    Ferredoxin-like    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    Aquifex aeolicus SCOP: d.58.42.1 Alpha and beta proteins (a+b)    Ferredoxin-like    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    Aquifex aeolicus GO:  transcriptional elongation regulator activity    regulation of transcription, DNA-dependent    CHAIN: B SWISS-PROT/TREMBL: O67757    KEYWORD: 3D-structure    Complete proteome    Transcription antitermination    Transcription termination    SCOP: b.114.1.1 All beta proteins    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    Aquifex aeolicus SCOP: b.34.5.4 All beta proteins    SH3-like barrel    Translation proteins SH3-like domain    N-utilization substance G protein NusG, C-terminal domain    N-utilization substance G protein NusG, C-terminal domain    Aquifex aeolicus SCOP: d.58.42.1 Alpha and beta proteins (a+b)    Ferredoxin-like    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    Aquifex aeolicus SCOP: d.58.42.1 Alpha and beta proteins (a+b)    Ferredoxin-like    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    Aquifex aeolicus GO:  transcriptional elongation regulator activity    regulation of transcription, DNA-dependent    CHAIN: C SWISS-PROT/TREMBL: O67757    KEYWORD: 3D-structure    Complete proteome    Transcription antitermination    Transcription termination    SCOP: b.114.1.1 All beta proteins    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    Aquifex aeolicus SCOP: b.34.5.4 All beta proteins    SH3-like barrel    Translation proteins SH3-like domain    N-utilization substance G protein NusG, C-terminal domain    N-utilization substance G protein NusG, C-terminal domain    Aquifex aeolicus SCOP: d.58.42.1 Alpha and beta proteins (a+b)    Ferredoxin-like    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    Aquifex aeolicus SCOP: d.58.42.1 Alpha and beta proteins (a+b)    Ferredoxin-like    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    Aquifex aeolicus GO:  transcriptional elongation regulator activity    regulation of transcription, DNA-dependent    CHAIN: D SWISS-PROT/TREMBL: O67757    KEYWORD: 3D-structure    Complete proteome    Transcription antitermination    Transcription termination    SCOP: b.114.1.1 All beta proteins    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    N-utilization substance G protein NusG, insert domain    Aquifex aeolicus SCOP: b.34.5.4 All beta proteins    SH3-like barrel    Translation proteins SH3-like domain    N-utilization substance G protein NusG, C-terminal domain    N-utilization substance G protein NusG, C-terminal domain    Aquifex aeolicus SCOP: d.58.42.1 Alpha and beta proteins (a+b)    Ferredoxin-like    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    Aquifex aeolicus SCOP: d.58.42.1 Alpha and beta proteins (a+b)    Ferredoxin-like    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    N-utilization substance G protein NusG, N-terminal domain    Aquifex aeolicus GO:  transcriptional elongation regulator activity    regulation of transcription, DNA-dependent

Image Source: PDB

Loops in ArchDB40 clusters

1npp_A_224 - HA => SUBCLASS : 2.1.2
1npp_A_52 - HA => SUBCLASS : 2.4.9
1npp_A_212 - HA => SUBCLASS : 4.1.1
1npp_A_168 - EH => SUBCLASS : 4.13.2
1npp_A_234 - AR => SUBCLASS : 3.4.6

Loops in ArchDB95 clusters

1npp_A_168 - EH => SUBCLASS : 3.1.1
1npp_A_52 - HA => SUBCLASS : 2.1.2
1npp_A_224 - HA => SUBCLASS : 2.1.3
1npp_A_212 - HA => SUBCLASS : 4.1.1
1npp_A_200 - HA => SUBCLASS : 8.27.1

Loops not clustered in ArchDB

1npp_A_43 - AR
1npp_A_159 - AR
1npp_A_124 - AR
1npp_A_92 - AR
1npp_A_62 - AR
1npp_A_12 - EH
1npp_A_138 - EH
1npp_A_83 - HA
1npp_A_164 - HA
1npp_A_73 - HA
1npp_A_116 - HA
1npp_A_23 - HE
1npp_A_147 - HE
1npp_A_174 - HE

1m1g A - percentage of sequence identity: 100
1m1g B - percentage of sequence identity: 100
1m1g C - percentage of sequence identity: 100
1m1g D - percentage of sequence identity: 100
1m1h A - percentage of sequence identity: 100
1npp A - percentage of sequence identity: 100
1npp B - percentage of sequence identity: 100
1npp C - percentage of sequence identity: 100
1npp D - percentage of sequence identity: 100
1npr A - percentage of sequence identity: 100
1nz9 A - percentage of sequence identity: 63