PDB: 1qo8 Compound: flavocytochrome c3 fumarate reductase Classification: OXIDOREDUCTASE Entry date in PDB: 2000-11-02 Resolution [Å]: 2.15 R-Factor: 0.225

CHAIN: A SWISS-PROT/TREMBL: Q9Z4P0    KEYWORD: 3D-structure    Electron transport    FAD    Flavoprotein    Heme    Iron    Oxidoreductase    Periplasmic    Signal    EC: 1.3.99.1 SCOP: a.138.1.3 All alpha proteins    Multiheme cytochromes    Multiheme cytochromes    Di-heme elbow motif    Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain    Shewanella frigidimarina SCOP: c.3.1.4 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain    Flavocytochrome c3 (respiratory fumarate reductase)    Shewanella frigidimarina SCOP: c.3.1.4 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain    Flavocytochrome c3 (respiratory fumarate reductase)    Shewanella frigidimarina SCOP: d.168.1.1 Alpha and beta proteins (a+b)    Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain    Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain    Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain    Flavocytochrome c3 (respiratory fumarate reductase)    Shewanella frigidimarina GO:  oxidoreductase activity    succinate dehydrogenase activity    electron transport    CHAIN: D SWISS-PROT/TREMBL: Q9Z4P0    KEYWORD: 3D-structure    Electron transport    FAD    Flavoprotein    Heme    Iron    Oxidoreductase    Periplasmic    Signal    EC: 1.3.99.1 SCOP: a.138.1.3 All alpha proteins    Multiheme cytochromes    Multiheme cytochromes    Di-heme elbow motif    Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain    Shewanella frigidimarina SCOP: c.3.1.4 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain    Flavocytochrome c3 (respiratory fumarate reductase)    Shewanella frigidimarina SCOP: c.3.1.4 Alpha and beta proteins (a/b)    FAD/NAD(P)-binding domain    FAD/NAD(P)-binding domain    Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain    Flavocytochrome c3 (respiratory fumarate reductase)    Shewanella frigidimarina SCOP: d.168.1.1 Alpha and beta proteins (a+b)    Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain    Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain    Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain    Flavocytochrome c3 (respiratory fumarate reductase)    Shewanella frigidimarina GO:  oxidoreductase activity    succinate dehydrogenase activity    electron transport

Image Source: PDB

Loops in ArchDB40 clusters

1qo8_A_131 - HE => SUBCLASS : 2.1.1
1qo8_A_374 - HE => SUBCLASS : 2.1.2
1qo8_A_339 - HE => SUBCLASS : 2.2.5
1qo8_A_425 - HE => SUBCLASS : 2.4.5
1qo8_A_248 - HE => SUBCLASS : 3.2.2
1qo8_A_339 - HE => SUBCLASS : 3.2.2
1qo8_A_248 - HE => SUBCLASS : 3.2.4
1qo8_A_271 - HA => SUBCLASS : 4.2.2
1qo8_A_227 - HA => SUBCLASS : 7.1.1
1qo8_A_437 - EH => SUBCLASS : 2.1.10
1qo8_A_120 - EH => SUBCLASS : 3.2.2
1qo8_A_267 - AR => SUBCLASS : 1.2.2
1qo8_A_351 - AR => SUBCLASS : 4.39.1
1qo8_A_418 - HH => SUBCLASS : 1.2.1
1qo8_A_418 - HH => SUBCLASS : 1.2.2
1qo8_A_442 - HH => SUBCLASS : 3.2.2
1qo8_A_442 - HH => SUBCLASS : 3.3.2
1qo8_A_184 - HH => SUBCLASS : 5.13.1
1qo8_A_173 - HH => SUBCLASS : 5.17.1
1qo8_A_173 - HH => SUBCLASS : 5.29.1

Loops in ArchDB95 clusters

1qo8_A_120 - EH => SUBCLASS : 3.5.3
1qo8_A_381 - EH => SUBCLASS : 13.9.1
1qo8_A_267 - AR => SUBCLASS : 1.1.5
1qo8_A_351 - AR => SUBCLASS : 4.38.1
1qo8_A_147 - AR => SUBCLASS : 15.3.1
1qo8_A_418 - HH => SUBCLASS : 1.1.1
1qo8_A_418 - HH => SUBCLASS : 1.2.1
1qo8_A_442 - HH => SUBCLASS : 3.1.1
1qo8_A_442 - HH => SUBCLASS : 3.1.2
1qo8_A_184 - HH => SUBCLASS : 5.22.1
1qo8_A_131 - HE => SUBCLASS : 2.1.1
1qo8_A_248 - HE => SUBCLASS : 2.1.3
1qo8_A_339 - HE => SUBCLASS : 2.1.3
1qo8_A_425 - HE => SUBCLASS : 2.4.6
1qo8_A_374 - HE => SUBCLASS : 2.5.1
1qo8_A_397 - HE => SUBCLASS : 4.64.1
1qo8_A_201 - HE => SUBCLASS : 5.71.1
1qo8_A_512 - HA => SUBCLASS : 4.11.3
1qo8_A_271 - HA => SUBCLASS : 5.1.2
1qo8_A_271 - HA => SUBCLASS : 5.1.4
1qo8_A_227 - HA => SUBCLASS : 8.1.1
1qo8_A_227 - HA => SUBCLASS : 8.10.1

Loops in ArchDB-EC clusters

1qo8_A_173 - HH => SUBCLASS : 5.12.1

Loops not clustered in ArchDB

1qo8_A_147 - AR
1qo8_A_504 - AR
1qo8_A_489 - AR
1qo8_A_267 - AR
1qo8_A_351 - AR
1qo8_A_489 - AR
1qo8_A_504 - AR
1qo8_A_520 - EH
1qo8_A_239 - EH
1qo8_A_295 - EH
1qo8_A_329 - EH
1qo8_A_357 - EH
1qo8_A_412 - EH
1qo8_A_167 - EH
1qo8_A_271 - HA
1qo8_A_284 - HA
1qo8_A_227 - HA
1qo8_A_284 - HA
1qo8_A_512 - HA
1qo8_A_453 - HE
1qo8_A_315 - HE
1qo8_A_107 - HE
1qo8_A_30 - HH
1qo8_A_5 - HH
1qo8_A_43 - HH

1qo8 A - percentage of sequence identity: 100
1qo8 D - percentage of sequence identity: 100