PDB: 1r8h Compound: regulatory protein e2 Classification: TRANSCRIPTION, REPLICATION Entry date in PDB: 2003-12-23 Resolution [Å]: 1.90 R-Factor: 0.195

CHAIN: A SWISS-PROT/TREMBL: Q84294    KEYWORD: Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    SCOP: d.58.8.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Viral DNA-binding domain    Viral DNA-binding domain    Papillomavirus-1 E2 protein    Human papillomavirus type 6a GO:  host cell nucleus    DNA binding    nucleotide binding    transcription factor activity    regulation of DNA replication    regulation of transcription, DNA-dependent    CHAIN: B SWISS-PROT/TREMBL: Q84294    KEYWORD: Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    SCOP: d.58.8.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Viral DNA-binding domain    Viral DNA-binding domain    Papillomavirus-1 E2 protein    Human papillomavirus type 6a GO:  host cell nucleus    DNA binding    nucleotide binding    transcription factor activity    regulation of DNA replication    regulation of transcription, DNA-dependent    CHAIN: C SWISS-PROT/TREMBL: Q84294    KEYWORD: Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    SCOP: d.58.8.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Viral DNA-binding domain    Viral DNA-binding domain    Papillomavirus-1 E2 protein    Human papillomavirus type 6a GO:  host cell nucleus    DNA binding    nucleotide binding    transcription factor activity    regulation of DNA replication    regulation of transcription, DNA-dependent    CHAIN: D SWISS-PROT/TREMBL: Q84294    KEYWORD: Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    SCOP: d.58.8.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Viral DNA-binding domain    Viral DNA-binding domain    Papillomavirus-1 E2 protein    Human papillomavirus type 6a GO:  host cell nucleus    DNA binding    nucleotide binding    transcription factor activity    regulation of DNA replication    regulation of transcription, DNA-dependent    CHAIN: E SWISS-PROT/TREMBL: Q84294    KEYWORD: Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    SCOP: d.58.8.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Viral DNA-binding domain    Viral DNA-binding domain    Papillomavirus-1 E2 protein    Human papillomavirus type 6a GO:  host cell nucleus    DNA binding    nucleotide binding    transcription factor activity    regulation of DNA replication    regulation of transcription, DNA-dependent    CHAIN: F SWISS-PROT/TREMBL: Q84294    KEYWORD: Activator    DNA replication    DNA-binding    Early protein    Nuclear protein    Repressor    Trans-acting factor    Transcription regulation    SCOP: d.58.8.1 Alpha and beta proteins (a+b)    Ferredoxin-like    Viral DNA-binding domain    Viral DNA-binding domain    Papillomavirus-1 E2 protein    Human papillomavirus type 6a GO:  host cell nucleus    DNA binding    nucleotide binding    transcription factor activity    regulation of DNA replication    regulation of transcription, DNA-dependent

Image Source: PDB

Loops in ArchDB40 clusters

1r8h_A_329 - EH => SUBCLASS : 2.1.6
1r8h_A_329 - EH => SUBCLASS : 2.1.11

Loops not clustered in ArchDB

1r8h_A_283 - EH
1r8h_A_293 - HE
1r8h_A_338 - HE

1r8h A - percentage of sequence identity: 100
1r8h B - percentage of sequence identity: 100
1r8h C - percentage of sequence identity: 100
1r8h D - percentage of sequence identity: 100
1r8h E - percentage of sequence identity: 100
1r8h F - percentage of sequence identity: 100