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Information on SUBCLASS 4.1.6
Subclass Accession number: 7871
Subclass: 4.1.6 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 11.4 +/- 13.1
Average RMSD (Å) : 0.446 +/- 0.176

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XcXXXXpX
(φψ)-conformation: bbaaalbb
Pattern: xx[DEHNW]x[adegrt][adgknrst][DGKNQRS][eknqrty]x[iltvy]
Conservation:0.460-0.5802.227-1.044-0.415-0.3870.6040.097-1.2700.309
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a06_*_341a06   -3746AEDKRTQKLVEEETTT--EEbbxaaavxxb
1apm_E_551apm   E6069VKHKESGNHYEEETTT--EEbbxaaavxxb
1b7y_A_2611b7y   A269278VWWPEGGKWLEEETTTTEEEbxxaaavbxb
1dlj_A_851dlj   A8592.YNSRINYF..EETTTTEE..xbaaalbx.
1h1w_A_951h1w   A99108ARELATSREYEEETTT--EEbbxaaavxbb
1hs6_A_161hs6   A2635SVDFTRRTLTEEETTTTEEEbxxaaalbbb
1inp_*_1961inp   -207216SQDLHTRRWKEE-TTT--EEbbxaaaUxxb
1ky9_A_871ky9   A92101IIDADKGYVVEEETTTTEEExabaaavxbx
1m8p_A_1021m8p   A105114LRDFRDDRNLEEETTTTEEExbxaaNvxxa
1nuw_A_11801nuw   A11851194MLDPAIGEFIEEETTTTEEExxxaaavbxb
1pme_*_391pme   -4251AYDNVNKVRVEEETTT-SEEbbxaaalbxb
1sll_*_4391sll   -440449IYNDATNQPTEEETTTTEEExbxaaavbxx
1wht_A_161wht   A2231TVDEGAGRSLEEETTTTEEExabaaavxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b7y_A_2611b7y   A     FYAADENOSINE-5'-[PHENYLALANINOL-PHOSPHATE] V - 261
1b7y_A_2611b7y   A     MGMAGNESIUM ION E - 262
1b7y_A_2611b7y   A     FYAADENOSINE-5'-[PHENYLALANINOL-PHOSPHATE] A - 265
1b7y_A_2611b7y   A     FYAADENOSINE-5'-[PHENYLALANINOL-PHOSPHATE] E - 279
1b7y_A_2611b7y   A     FYAADENOSINE-5'-[PHENYLALANINOL-PHOSPHATE] L - 280
1b7y_A_2611b7y   A     FYAADENOSINE-5'-[PHENYLALANINOL-PHOSPHATE] G - 281
1b7y_A_2611b7y   A     FYAADENOSINE-5'-[PHENYLALANINOL-PHOSPHATE] G - 282
1b7y_A_2611b7y   A     FYAADENOSINE-5'-[PHENYLALANINOL-PHOSPHATE] A - 283
1b7y_A_2611b7y   A     FYAADENOSINE-5'-[PHENYLALANINOL-PHOSPHATE] G - 284
1h1w_A_951h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 95
1h1w_A_951h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 96
1h1w_A_951h1w   A     GOLGLYCEROL L - 102
1h1w_A_951h1w   A     GOLGLYCEROL A - 103
1h1w_A_951h1w   A     GOLGLYCEROL T - 104
1h1w_A_951h1w   A     GOLGLYCEROL S - 105
1h1w_A_951h1w   A     GOLGLYCEROL R - 106
1h1w_A_951h1w   A     GOLGLYCEROL E - 107
1h1w_A_951h1w   A     GOLGLYCEROL Y - 108
1h1w_A_951h1w   A     GOLGLYCEROL A - 109
1h1w_A_951h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 109
1h1w_A_951h1w   A     GOLGLYCEROL K - 111
1h1w_A_951h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 111
1h1w_A_951h1w   A     GOLGLYCEROL I - 112
1h1w_A_951h1w   A     GOLGLYCEROL L - 113
1hs6_A_161hs6   A     YBYTTERBIUM (III) ION R - 31
1hs6_A_161hs6   A     YBYTTERBIUM (III) ION T - 33
1hs6_A_161hs6   A     YBYTTERBIUM (III) ION T - 35
1ky9_A_871ky9   A     MSESELENOMETHIONINE L - 87
1ky9_A_871ky9   A     MSESELENOMETHIONINE I - 93
1pme_*_391pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE V - 39
1pme_*_391pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE V - 51
1pme_*_391pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE A - 52
1pme_*_391pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE I - 53
1pme_*_391pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE K - 54
1wht_A_161wht   A     NAGN-ACETYL-D-GLUCOSAMINE T - 22
1wht_A_161wht   A     FUCFUCOSE T - 22
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h1w_A_951h1w   A AC7GOL BINDING SITE FOR CHAIN AS - 105
1h1w_A_951h1w   A AC5GOL BINDING SITE FOR CHAIN AR - 106
1h1w_A_951h1w   A AC5GOL BINDING SITE FOR CHAIN AE - 107
1h1w_A_951h1w   A AC5GOL BINDING SITE FOR CHAIN AY - 108
1h1w_A_951h1w   A BC6ATP BINDING SITE FOR CHAIN AA - 109
1h1w_A_951h1w   A AC8GOL BINDING SITE FOR CHAIN AK - 111

Clusters included in this Subclass
CLUSTER: HA.5.20