Information on SUBCLASS 8.1.1 |
Subclass Accession number: 6516
Subclass: 8.1.1 ![]() Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: ![]() ![]() Consensus coordinates: ![]() ![]() |
Number of loops: 13 Average sequence ID (%) : 14.6 +/- 18.1 Average RMSD (Å) : 0.885 +/- 0.524 Consensus geometry
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Consensus Sequence: | XXpXXcXXpXXX |
(φψ)-conformation: | bbpppgbappbb |
Pattern: | x | [fiktv] | x | x | x | [dgn] | x | x | x | x | x | x | x |
Conservation: | -0.611 | 0.003 | -0.336 | -0.317 | -0.268 | 3.211 | -0.298 | -0.555 | 0.302 | -0.254 | -0.499 | -0.470 | 0.091 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1fx2_A_1083 | 1fx2 | A | 1088 | 1100 | DVALRGVSDPVKM | EE--TT-SS-EEE | bbxbxgxabxbxb |
1fx4_A_1071 | 1fx4 | A | 1076 | 1088 | ATVLRGVPEPVRM | EE--TT-SS-EEE | xbxbxvbabxbxb |
1fzc_B_277 | 1fzc | B | 277 | 289 | ATNTDGKNYCGLP | EE--TT-SS--EE | bbxxpvbabxabx |
1hqz_1_65 | 1hqz | 1 | 70 | 82 | RVSPPGSDVEKII | EE--TT-S--EEE | bbbxxgbaxbbbb |
1mix_A_311 | 1mix | A | 316 | 328 | KEKMKGKNKLVPR | EE--SS-SS-EEE | bxbxplbaxxbwb |
1mk7_B_311 | 1mk7 | B | 316 | 328 | KEKMKGKNKLVPR | EE--TT-SS-EEE | bbxbxvbappbwb |
1mx1_A_1036 | 1mx1 | A | 1037 | 1049 | FVSLEGFAQPVAI | EE--TT-SS-EEE | xbxbpgbaxxxxb |
1ny5_A_259 | 1ny5 | A | 259 | 270 | KFYRLGGRKEIE. | EE--BT--S-EE. | bbbxxvbaxpbb. |
1oey_A_392 | 1oey | A | 393 | 404 | SYRPRDSNELVP. | EE--TT-SS-EE. | bbxxpvbaxxbx. |
1qas_A_353 | 1qas | A | 353 | 365 | IIYHGYTFTSKIL | EES-TTS----EE | bbbxpvbaxpbbx |
1qo8_A_227 | 1qo8 | A | 228 | 240 | LKRSGGARVDRTH | EE--TT-SS--EE | bbbbpvxabxaxb |
1utc_A_198 | 1utc | A | 203 | 215 | QFKMEGNAEESTL | EE--TT-SS-EEE | xbbxxvxabpxxx |
3pmg_A_170 | 3pmg | A | 173 | 185 | QFDLENKFKPFTV | EE--TT-SS-EEE | bbxxplbaxxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1mx1_A_1036 | 1mx1 | A | SIAO-SIALIC ACID | F - 1050 |
1mx1_A_1036 | 1mx1 | A | SIAO-SIALIC ACID | L - 1051 |
1mx1_A_1036 | 1mx1 | A | SIAO-SIALIC ACID | G - 1052 |
1mx1_A_1036 | 1mx1 | A | SIAO-SIALIC ACID | I - 1053 |
1mx1_A_1036 | 1mx1 | A | SIAO-SIALIC ACID | P - 1054 |
1ny5_A_259 | 1ny5 | A | PO4PHOSPHATE ION | K - 259 |
1ny5_A_259 | 1ny5 | A | PO4PHOSPHATE ION | F - 260 |
1ny5_A_259 | 1ny5 | A | PO4PHOSPHATE ION | Y - 261 |
1ny5_A_259 | 1ny5 | A | PO4PHOSPHATE ION | R - 262 |
1ny5_A_259 | 1ny5 | A | GOLGLYCEROL | R - 266 |
1ny5_A_259 | 1ny5 | A | GOLGLYCEROL | K - 267 |
1ny5_A_259 | 1ny5 | A | PO4PHOSPHATE ION | I - 269 |
1oey_A_392 | 1oey | A | MSESELENOMETHIONINE | Y - 394 |
1oey_A_392 | 1oey | A | MSESELENOMETHIONINE | R - 395 |
1qo8_A_227 | 1qo8 | A | FADFLAVIN-ADENINE DINUCLEOTIDE | R - 241 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1qo8_A_227 | 1qo8 | A | AC3HEM BINDING SITE FOR RESDIUE A603 | D - 227 |
Clusters included in this Subclass |
CLUSTER: HA.7.110 |
CLUSTER: HA.7.26 |
CLUSTER: HA.8.6 |