Information on SUBCLASS 12.2.1 |
Subclass Accession number: 6591
Subclass: 12.2.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 3.4 (>75 %) 3.4.21 (>50 %) 3.4.21 (>75 %) GO : GO:0004175 (>75 %) GO:0004252 (>75 %) GO:0004252 (>75 %) GO:0008233 (>75 %) GO:0008236 (>75 %) GO:0008236 (>75 %) SCOP : 50493 (>75 %) 50493 (>75 %) 50494 (>75 %) 50494 (>75 %) 50514 (>75 %) 50514 (>75 %) |
Number of loops: 12 Average sequence ID (%) : 38.1 +/- 25.7 Average RMSD (Å) : 0.683 +/- 0.439 Consensus geometry
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Consensus Sequence: | XLGXHpXXppEXpXQp |
(φψ)-conformation: | bblpapaabppaapbb |
Pattern: | [knqt] | [V] | [fitv] | [IL] | [G] | [AKR] | [HT] | [DNQSY] | x | x | [eknqrt] | [enpqr] | [EG] | [deknprs] | [ehkst] | [ekqw] | [EQ] | x | [fil] | [EKPST] | [AIMV] | x | [DKQR] | x | [FIV] | x |
Conservation: | -0.504 | 1.425 | -0.570 | 1.101 | 2.568 | 0.004 | 2.024 | -0.130 | -0.686 | -0.741 | -0.515 | -0.823 | 0.869 | -0.718 | -0.558 | -0.583 | 1.303 | -0.977 | -0.139 | -0.331 | 0.411 | -0.961 | 0.299 | -1.157 | 0.438 | -1.047 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cgh_A_64 | 1cgh | A | 65 | 90 | NVTLGAHNIQRRENTQQHITARRAIR | EEEES-SBTTS--TT-EEEEEEEEEE | bbbbvxaxaabxxaaxbbbxxabbxx |
1ddj_A_615 | 1ddj | A | 615 | 640 | KVILGAHQEVNLEPHVQEIEVSRLFL | EEEES-SBSSS--TT-EEEEEEEEEE | bbbbvxNxaaxxxaaxxbbxxabbbx |
1euf_A_62 | 1euf | A | 65 | 90 | NVTLGAHNIMERERTQQVIPVRRPIP | EEEES-SBTTS--TT-EEEEEEEEEE | bbbbvbabaabxxaaxbbbxxabwbx |
1fi8_A_64 | 1fi8 | A | 66 | 91 | QVTLGAHNIKEQEKMQQIIPVVKIIP | EEEES-SBTTS--TT-EEEEEEEEEE | bbbblbabaaxxxaaxbxbxxabxbx |
1fuj_A_64 | 1fuj | A | 65 | 90 | NVVLGAHNVRTQEPTQQHFSVAQVFL | EEEES-SBTTS--TT-EEEEEEEEEE | bxbbvxaxaabxxaaxbbbbxabbbb |
1iau_A_63 | 1iau | A | 65 | 90 | NVTLGAHNIKEQEPTQQFIPVKRPIP | EEEES-SBTTS--TT-EEEEEEEEEE | bxbbvxaxaabxbaaxbxbxxabwbx |
1lo6_A_64 | 1lo6 | A | 64 | 89 | QVFLGKHNLRQRESSQEQSSVVRAVI | EEEES-SBTTS--TT-EEEEEEEEEE | bbbbvxabaabxbaaxbbbxbabbbx |
1mza_A_64 | 1mza | A | 65 | 90 | TVVLGAHSLSKNEASKQTLEIKKFIP | EEEES-SBSSS--TT-EEEEEEEEEE | bbbblbabaaxxbaaxbbbxxabbbx |
1nn6_A_65 | 1nn6 | A | 67 | 92 | TVTLGAHNITEEEDTWQKLEVIKQFR | EEEES-SBTTS--TT-EEEEEEEEEE | bbbbvxaxaabpbaaxbxbxxabxbx |
1rtf_B_64 | 1rtf | B | 65 | 90 | TVILGRTYRVVPGEEEQKFEVEKYIV | EEEES-SBSSS--TT-EEEEEEEEEE | bbbbvbaxaabpxaaxbxbxxabbbb |
1ucy_H_64 | 1ucy | H | 65 | 90 | LVRIGKHSRTRYERKVEKISMLDKIY | EEEES---SSS--TTT-EEEEEEEEE | bbbbvxaxaaxxxaaaxbxbbxabbb |
3rp2_A_63 | 3rp2 | A | 65 | 90 | TVILGAHDVRKRESTQQKIKVEKQII | EEEES-SBTTS--TT-EEEEEEEEEE | bbbxvbaxaabxxaaxbxbxxabbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1euf_A_62 | 1euf | A | NAGN-ACETYL-D-GLUCOSAMINE | S - 62 |
1euf_A_62 | 1euf | A | NAGN-ACETYL-D-GLUCOSAMINE | S - 63 |
1euf_A_62 | 1euf | A | NAGN-ACETYL-D-GLUCOSAMINE | I - 64 |
1euf_A_62 | 1euf | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 65 |
1euf_A_62 | 1euf | A | NAGN-ACETYL-D-GLUCOSAMINE | V - 82 |
1euf_A_62 | 1euf | A | NAGN-ACETYL-D-GLUCOSAMINE | P - 84 |
1iau_A_63 | 1iau | A | ZNZINC ION | G - 69 |
1iau_A_63 | 1iau | A | ZNZINC ION | H - 71 |
1iau_A_63 | 1iau | A | ZNZINC ION | K - 74 |
1iau_A_63 | 1iau | A | ZNZINC ION | E - 77 |
1iau_A_63 | 1iau | A | ZNZINC ION | T - 79 |
1iau_A_63 | 1iau | A | NAGN-ACETYL-D-GLUCOSAMINE | F - 82 |
1nn6_A_65 | 1nn6 | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 74 |
1nn6_A_65 | 1nn6 | A | NAGN-ACETYL-D-GLUCOSAMINE | I - 75 |
1nn6_A_65 | 1nn6 | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 76 |
1nn6_A_65 | 1nn6 | A | NAGN-ACETYL-D-GLUCOSAMINE | E - 77 |
Clusters included in this Subclass |
CLUSTER: HA.12.2 |