ArchDB - Biological DataBase of Protein Loops

Information on 1ucy

PDB: 1ucy
Compound: thrombin
Classification: COMPLEX (SERINE PROTEASE/COAGULATION)
Entry date in PDB: 1997-02-12
Resolution [Å]: 2.20
R-Factor: 0.171

CHAIN: E

SWISS-PROT/TREMBL: P00735
   KEYWORD: 3D-structure    Acute phase    Blood coagulation    Calcium-binding    Gamma-carboxyglutamic acid    Glycoprotein    Hydrolase    Kringle    Plasma    Repeat    Serine protease    Signal    Vitamin K    Zymogen
EC: 3.4.21.5
SCOP: b.47.1.2 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Eukaryotic proteases    Thrombin    Cow (Bos taurus)
GO:  extracellular region    calcium ion binding    chymotrypsin activity    thrombin activity    trypsin activity    blood coagulation    proteolysis and peptidolysis

CHAIN: H

CHAIN: J

CHAIN: K

CHAIN: L

CHAIN: M

CHAIN: N

Image Source: PDB

Stored Loops of 1ucy

Loops in ArchDB95 clusters

1ucy_H_104 - EH => SUBCLASS : 17.3.1
1ucy_E_180 - AR => SUBCLASS : 19.1.1
1ucy_E_198 - HA => SUBCLASS : 4.4.1
1ucy_E_198 - HA => SUBCLASS : 6.16.1
1ucy_H_64 - HA => SUBCLASS : 12.2.1

Loops not clustered in ArchDB

1ucy_H_51 - AR
1ucy_E_226 - EH
1ucy_H_30 - HA
1ucy_H_39 - HA
1ucy_H_60 - HA
1ucy_H_81 - HA
1ucy_E_207 - HA
1ucy_E_165 - HE

Homologous structures to 1ucy classified in ArchDB

1a0h B - percentage of sequence identity: 100
1a0h E - percentage of sequence identity: 100
1a2c H - percentage of sequence identity: 85
1a3b H - percentage of sequence identity: 85
1a3e H - percentage of sequence identity: 85
1a46 H - percentage of sequence identity: 85
1a4w H - percentage of sequence identity: 85
1a5g H - percentage of sequence identity: 85
1a61 H - percentage of sequence identity: 85
1abi H - percentage of sequence identity: 85
1abj H - percentage of sequence identity: 85
1ad8 H - percentage of sequence identity: 85
1ae8 H - percentage of sequence identity: 85
1afe H - percentage of sequence identity: 85
1aht H - percentage of sequence identity: 85
1ai8 H - percentage of sequence identity: 85
1aix H - percentage of sequence identity: 85
1avg H - percentage of sequence identity: 100
1awf H - percentage of sequence identity: 85
1awh B - percentage of sequence identity: 85
1awh D - percentage of sequence identity: 85
1ay6 H - percentage of sequence identity: 85
1b5g H - percentage of sequence identity: 85
1b7x B - percentage of sequence identity: 85
1ba8 B - percentage of sequence identity: 85
1bb0 B - percentage of sequence identity: 85
1bbr H - percentage of sequence identity: 100
1bbr K - percentage of sequence identity: 100
1bbr N - percentage of sequence identity: 100
1bcu H - percentage of sequence identity: 85
1bhx B - percentage of sequence identity: 85
1bmm H - percentage of sequence identity: 85
1bmn H - percentage of sequence identity: 85
1bth H - percentage of sequence identity: 86
1bth K - percentage of sequence identity: 86
1c1u H - percentage of sequence identity: 85
1c1v H - percentage of sequence identity: 85
1c1w H - percentage of sequence identity: 85
1c4u 2 - percentage of sequence identity: 85
1c4v 2 - percentage of sequence identity: 85
1c4y 2 - percentage of sequence identity: 85
1c5l H - percentage of sequence identity: 85
1c5n H - percentage of sequence identity: 85
1c5o H - percentage of sequence identity: 85
1ca8 B - percentage of sequence identity: 85
1d3d B - percentage of sequence identity: 85
1d3p B - percentage of sequence identity: 85
1d3q B - percentage of sequence identity: 85
1d3t B - percentage of sequence identity: 85
1d4p B - percentage of sequence identity: 85
1d6w A - percentage of sequence identity: 85
1d9i A - percentage of sequence identity: 85
1de7 H - percentage of sequence identity: 85
1de7 K - percentage of sequence identity: 85
1dit H - percentage of sequence identity: 85
1dm4 B - percentage of sequence identity: 85
1doj A - percentage of sequence identity: 85
1dwb H - percentage of sequence identity: 85
1dwc H - percentage of sequence identity: 85
1dwd H - percentage of sequence identity: 85
1dwe H - percentage of sequence identity: 85
1dx5 M - percentage of sequence identity: 85
1dx5 N - percentage of sequence identity: 85
1dx5 O - percentage of sequence identity: 85
1dx5 P - percentage of sequence identity: 85
1e0f D - percentage of sequence identity: 85
1e0f E - percentage of sequence identity: 85
1e0f F - percentage of sequence identity: 85
1eb1 H - percentage of sequence identity: 85
1eoj A - percentage of sequence identity: 85
1eol A - percentage of sequence identity: 85
1etr H - percentage of sequence identity: 100
1ets H - percentage of sequence identity: 100
1ett H - percentage of sequence identity: 100
1fpc H - percentage of sequence identity: 85
1fph H - percentage of sequence identity: 85
1g30 B - percentage of sequence identity: 85
1g32 B - percentage of sequence identity: 85
1g37 A - percentage of sequence identity: 85
1ghv H - percentage of sequence identity: 85
1ghw H - percentage of sequence identity: 85
1ghx H - percentage of sequence identity: 85
1ghy H - percentage of sequence identity: 85
1gj4 H - percentage of sequence identity: 85
1gj5 H - percentage of sequence identity: 85
1h8d H - percentage of sequence identity: 94
1h8i H - percentage of sequence identity: 85
1hag E - percentage of sequence identity: 85
1hah H - percentage of sequence identity: 85
1hai H - percentage of sequence identity: 85
1hao H - percentage of sequence identity: 85
1hap H - percentage of sequence identity: 85
1hbt H - percentage of sequence identity: 85
1hdt H - percentage of sequence identity: 85
1hgt H - percentage of sequence identity: 85
1hlt H - percentage of sequence identity: 85
1hlt K - percentage of sequence identity: 85
1hrt H - percentage of sequence identity: 100
1hut H - percentage of sequence identity: 85
1hxe H - percentage of sequence identity: 85
1hxf H - percentage of sequence identity: 85
1id5 H - percentage of sequence identity: 100
1ihs H - percentage of sequence identity: 85
1iht H - percentage of sequence identity: 85
1jmo H - percentage of sequence identity: 85
1jou B - percentage of sequence identity: 89
1jou D - percentage of sequence identity: 85
1jou F - percentage of sequence identity: 85
1jwt A - percentage of sequence identity: 85
1k21 H - percentage of sequence identity: 85
1k22 H - percentage of sequence identity: 85
1kts B - percentage of sequence identity: 85
1ktt B - percentage of sequence identity: 85
1lhc H - percentage of sequence identity: 85
1lhd H - percentage of sequence identity: 85
1lhe H - percentage of sequence identity: 85
1lhf H - percentage of sequence identity: 85
1lhg H - percentage of sequence identity: 85
1mh0 A - percentage of sequence identity: 85
1mh0 B - percentage of sequence identity: 85
1mkw H - percentage of sequence identity: 100
1mkw K - percentage of sequence identity: 100
1mkx H - percentage of sequence identity: 100
1mkx K - percentage of sequence identity: 100
1mu6 B - percentage of sequence identity: 85
1mu8 B - percentage of sequence identity: 85
1mue B - percentage of sequence identity: 85
1nm6 A - percentage of sequence identity: 85
1no9 H - percentage of sequence identity: 85
1nrn H - percentage of sequence identity: 85
1nro H - percentage of sequence identity: 85
1nrp H - percentage of sequence identity: 85
1nrq H - percentage of sequence identity: 85
1nrr H - percentage of sequence identity: 85
1nrs H - percentage of sequence identity: 85
1nt1 A - percentage of sequence identity: 85
1nu7 B - percentage of sequence identity: 85
1nu7 F - percentage of sequence identity: 85
1nu9 A - percentage of sequence identity: 85
1nu9 D - percentage of sequence identity: 85
1ny2 2 - percentage of sequence identity: 85
1nzq H - percentage of sequence identity: 85
1o0d H - percentage of sequence identity: 85
1o2g H - percentage of sequence identity: 85
1o5g H - percentage of sequence identity: 85
1ook B - percentage of sequence identity: 85
1oyt H - percentage of sequence identity: 85
1p8v C - percentage of sequence identity: 85
1ppb H - percentage of sequence identity: 85
1qbv H - percentage of sequence identity: 85
1qhr B - percentage of sequence identity: 85
1qj1 B - percentage of sequence identity: 85
1qj6 B - percentage of sequence identity: 85
1qj7 B - percentage of sequence identity: 85
1qur H - percentage of sequence identity: 85
1qvh B - percentage of sequence identity: 85
1qvh E - percentage of sequence identity: 85
1rd3 B - percentage of sequence identity: 85
1rd3 D - percentage of sequence identity: 85
1riw B - percentage of sequence identity: 85
1sb1 H - percentage of sequence identity: 85
1sfq B - percentage of sequence identity: 85
1sfq E - percentage of sequence identity: 85
1sg8 B - percentage of sequence identity: 85
1sg8 E - percentage of sequence identity: 85
1sgi B - percentage of sequence identity: 85
1sgi E - percentage of sequence identity: 85
1shh B - percentage of sequence identity: 85
1shh E - percentage of sequence identity: 85
1sl3 A - percentage of sequence identity: 85
1sr5 C - percentage of sequence identity: 85
1t4u H - percentage of sequence identity: 85
1t4v H - percentage of sequence identity: 85
1ta2 A - percentage of sequence identity: 85
1ta6 A - percentage of sequence identity: 85
1tb6 H - percentage of sequence identity: 85
1tbq H - percentage of sequence identity: 100
1tbq K - percentage of sequence identity: 100
1tbr H - percentage of sequence identity: 100
1tbr K - percentage of sequence identity: 100
1tbz H - percentage of sequence identity: 85
1thp B - percentage of sequence identity: 85
1thr H - percentage of sequence identity: 85
1ths H - percentage of sequence identity: 85
1tmb H - percentage of sequence identity: 85
1tmt H - percentage of sequence identity: 85
1tmu H - percentage of sequence identity: 85
1toc B - percentage of sequence identity: 100
1toc D - percentage of sequence identity: 100
1toc F - percentage of sequence identity: 100
1toc H - percentage of sequence identity: 100
1tom H - percentage of sequence identity: 85
1tq0 B - percentage of sequence identity: 85
1tq0 D - percentage of sequence identity: 85
1tq7 B - percentage of sequence identity: 85
1twx B - percentage of sequence identity: 85
1ucy H - percentage of sequence identity: 100
1ucy K - percentage of sequence identity: 100
1ucy N - percentage of sequence identity: 100
1uma H - percentage of sequence identity: 85
1uvs H - percentage of sequence identity: 85
1uvt H - percentage of sequence identity: 100
1uvu H - percentage of sequence identity: 100
1vit F - percentage of sequence identity: 100
1vit H - percentage of sequence identity: 100
1vr1 H - percentage of sequence identity: 89
1vzq H - percentage of sequence identity: 85
1way B - percentage of sequence identity: 85
1wbg B - percentage of sequence identity: 85
1xm1 A - percentage of sequence identity: 85
1xmn B - percentage of sequence identity: 85
1xmn D - percentage of sequence identity: 85
1xmn F - percentage of sequence identity: 85
1xmn H - percentage of sequence identity: 85
1ycp H - percentage of sequence identity: 100
1ycp K - percentage of sequence identity: 100
1ype H - percentage of sequence identity: 85
1ypg H - percentage of sequence identity: 85
1ypj H - percentage of sequence identity: 85
1ypk H - percentage of sequence identity: 85
1ypl H - percentage of sequence identity: 85
1ypm H - percentage of sequence identity: 85
1z71 A - percentage of sequence identity: 85
1z8i B - percentage of sequence identity: 85
1z8j B - percentage of sequence identity: 85
1zgi A - percentage of sequence identity: 85
1zgv A - percentage of sequence identity: 85
1zrb A - percentage of sequence identity: 85
2a0q B - percentage of sequence identity: 85
2a0q D - percentage of sequence identity: 85
2a1d B - percentage of sequence identity: 100
2a1d F - percentage of sequence identity: 100
2afq B - percentage of sequence identity: 85
2afq D - percentage of sequence identity: 85
2hgt H - percentage of sequence identity: 85
2hnt C - percentage of sequence identity: 92
2hnt E - percentage of sequence identity: 80
2hnt F - percentage of sequence identity: 94
2hpp H - percentage of sequence identity: 85
2hpq H - percentage of sequence identity: 85
2thf B - percentage of sequence identity: 85
3hat H - percentage of sequence identity: 85
3htc H - percentage of sequence identity: 85
4htc H - percentage of sequence identity: 85
4thn H - percentage of sequence identity: 85
5gds H - percentage of sequence identity: 85
7kme H - percentage of sequence identity: 85
8kme 2 - percentage of sequence identity: 85
null nu - percentage of sequence identity: 0