Information on SUBCLASS 5.22.1 |
Subclass Accession number: 746
Subclass: 5.22.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1.13 (>50 %) 1.13.11 (>50 %) GO : GO:0016701 (>50 %) GO:0016702 (>50 %) GO:0051213 (>50 %) SCOP : 49817 (>75 %) 49818 (>75 %) 49823 (>75 %) |
Number of loops: 5 Average sequence ID (%) : 31.1 +/- 24.0 Average RMSD (Å) : 0.320 +/- 0.045 Consensus geometry
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Consensus Sequence: | XphhXGGXX |
(φψ)-conformation: | bbpaaeebb |
Pattern: | [fh] | [stv] | [KLM] | [APS] | x | [AG] | [G] | [ASTV] | [aqt] |
Conservation: | -0.299 | -0.549 | -0.203 | 0.011 | -1.093 | 0.896 | 2.242 | -0.362 | -0.643 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dxr_H_66 | 1dxr | H | 68 | 76 | FVLPHGGTV | EE-TTS-EE | xxxaaeebb |
1ff4_A_2 | 1ff4 | A | 5 | 13 | TTKSIGGVT | EE-TTSSEE | bxxaaeebb |
1hn0_A_296 | 1hn0 | A | 296 | 304 | HTLANGGTQ | EE-TTS-EE | bxbaaeebb |
1jb0_D_37 | 1jb0 | D | 39 | 47 | FEMPTAGAA | EE-TTSSEE | bbxaaMexb |
1od3_A_43 | 1od3 | A | 45 | 53 | FSLPGGGSA | EE-TTSSEE | bxxaaeebb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1od3_A_43 | 1od3 | A | BGCBETA-D-GLUCOSE | I - 44 |
1od3_A_43 | 1od3 | A | BGCBETA-D-GLUCOSE | F - 45 |
1od3_A_43 | 1od3 | A | CACALCIUM ION | L - 47 |
1od3_A_43 | 1od3 | A | CACALCIUM ION | G - 51 |
1od3_A_43 | 1od3 | A | CACALCIUM ION | S - 52 |
1od3_A_43 | 1od3 | A | CACALCIUM ION | A - 53 |
1od3_A_43 | 1od3 | A | BGCBETA-D-GLUCOSE | I - 54 |
1od3_A_43 | 1od3 | A | BGCBETA-D-GLUCOSE | G - 55 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1od3_A_43 | 1od3 | A | AC5BGC BINDING SITE FOR CHAIN A | I - 44 |
1od3_A_43 | 1od3 | A | AC4CA BINDING SITE FOR CHAIN A | S - 52 |
1od3_A_43 | 1od3 | A | AC2BGC BINDING SITE FOR CHAIN A | G - 55 |
Clusters included in this Subclass |
CLUSTER: HA.4.81 |
CLUSTER: HA.6.48 |