Information on SUBCLASS 5.5.1 |
Subclass Accession number: 7940
Subclass: 5.5.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 11 Average sequence ID (%) : 15.6 +/- 18.6 Average RMSD (Å) : 0.445 +/- 0.104 Consensus geometry
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Consensus Sequence: | hXhXcpXXX |
(φψ)-conformation: | bbpplbppb |
Pattern: | [CILTVY] | [dhkqsw] | [AGLPV] | [dekpq] | [DGN] | [ehkr] | [aeps] | x | [fiklv] | [afiltv] |
Conservation: | 0.388 | -1.194 | -0.812 | -0.022 | 2.229 | 0.736 | -0.423 | -0.480 | -0.825 | 0.402 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bsg_*_244 | 1bsg | - | 250 | 259 | TWPPGRAPIV | EE-TTS--EE | bbxpvbxxbb |
1bue_A_244 | 1bue | A | 250 | 259 | VWPKNRAPLI | EE-TTS--EE | bbxxlbxxbb |
1ctt_*_146 | 1ctt | - | 147 | 156 | IHLPGREAHA | EE-TTS--EE | bbbxvbxxbx |
1cvr_A_412 | 1cvr | A | 417 | 426 | VVGYNKVTVI | EE-TTB--EE | bbbplbxxbb |
1d0c_A_293 | 1d0c | A | 295 | 304 | LQAPDEAPEL | EE-TTS--EE | bbxplbxxbb |
1dmh_A_224 | 1dmh | A | 229 | 238 | VSADGHRKLT | EE-TTB--EE | bbbpvbxxxb |
1hzo_A_243 | 1hzo | A | 250 | 259 | IWPENHAPLI | EE-TTS--EE | bbxplbxpbb |
1l9m_A_568 | 1l9m | A | 575 | 584 | CKVPDESEVV | EE-TTS--EE | bbbpvbpxbx |
1mjt_A_160 | 1mjt | A | 162 | 171 | YQLPNESVKF | EE-TTS--EE | bbxxvbxxbb |
1nd4_A_35 | 1nd4 | A | 39 | 48 | LSAQGRPVLF | EE-TTS--EE | bbbpvbpxbb |
2shp_A_63 | 2shp | A | 63 | 71 | YDLYGGEKF. | EEETTS-EE. | xbxxvbxxb. |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dmh_A_224 | 1dmh | A | FEFE (III) ION | H - 224 |
1dmh_A_224 | 1dmh | A | MCT4-METHYLCATECHOL | H - 224 |
1dmh_A_224 | 1dmh | A | FEFE (III) ION | H - 226 |
1dmh_A_224 | 1dmh | A | MCT4-METHYLCATECHOL | H - 226 |
1dmh_A_224 | 1dmh | A | FEFE (III) ION | Q - 240 |
1dmh_A_224 | 1dmh | A | MCT4-METHYLCATECHOL | Q - 240 |
1hzo_A_243 | 1hzo | A | MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID | N - 245 |
1nd4_A_35 | 1nd4 | A | ACTACETATE ION | F - 48 |
Clusters included in this Subclass |
CLUSTER: HA.5.50 |
CLUSTER: HA.6.18 |