Information on SUBCLASS 6.13.1 |
Subclass Accession number: 778
Subclass: 6.13.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 14 (>50 %) |
Number of loops: 7 Average sequence ID (%) : 11.4 +/- 12.9 Average RMSD (Å) : 1.186 +/- 0.511 Consensus geometry
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Consensus Sequence: | XXhXcpXXhX |
(φψ)-conformation: | bbppgbppbb |
Pattern: | x | x | x | [iklv] | [ekp] | [DG] | [dersy] | [dgnt] | [agps] | [imvw] | x | [fgikt] | x |
Conservation: | -0.038 | -0.783 | -0.949 | 0.332 | 0.543 | 2.748 | -0.615 | -0.409 | 0.425 | 0.545 | -0.456 | -1.115 | -0.227 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cpt_*_40 | 1cpt | - | 42 | 54 | MAHIEGYDPMWIA | EE--TTS--EEEE | bbbbxvbxwbxbx |
1dbh_A_513 | 1dbh | A | 515 | 527 | EIILKDENSVIFS | EE--TTS--EEEE | bbbxxUbxxbbbb |
1dcp_A_26 | 1dcp | A | 26 | 37 | .NELEGRDAIFKQ | .EE-TTSS-EEEE | .bxxxgbxbbbbb |
1k2x_B_294 | 1k2x | B | 298 | 310 | AWGYAGDTPTTGI | EE--TTS--EEEE | bbbxpvbxxbbba |
1vrt_A_60 | 1vrt | A | 62 | 74 | AIKKKDSTKWRKL | EEE-TTS--EEEE | bbbxpvbbbxbbb |
2dkb_*_395 | 2dkb | - | 395 | 407 | IVQLPGMGGVFRI | EE--TTS--EEEE | bbbbpvbxxbxxb |
3grs_*_260 | 3grs | - | 266 | 278 | VTAVPGRLPVMTM | EE--TTS--EEEE | bbbxxvbxxbxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dbh_A_513 | 1dbh | A | MSESELENOMETHIONINE | A - 513 |
1dbh_A_513 | 1dbh | A | MSESELENOMETHIONINE | F - 514 |
1dbh_A_513 | 1dbh | A | MSESELENOMETHIONINE | I - 516 |
1dbh_A_513 | 1dbh | A | MSESELENOMETHIONINE | L - 518 |
1dbh_A_513 | 1dbh | A | MSESELENOMETHIONINE | F - 526 |
2dkb_*_395 | 2dkb | * | MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID | V - 396 |
2dkb_*_395 | 2dkb | * | MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID | L - 398 |
2dkb_*_395 | 2dkb | * | MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID | R - 406 |
Clusters included in this Subclass |
CLUSTER: HA.7.37 |
CLUSTER: HA.8.12 |