Information on SUBCLASS 2.8.4 |
Subclass Accession number: 5441
Subclass: 2.8.4 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 45.4 +/- 28.1 Average RMSD (Å) : 0.350 +/- 0.129 Consensus geometry
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Consensus Sequence: | phGphX |
(φψ)-conformation: | aaeppa |
Pattern: | [EK] | [DKR] | [ES] | [IL] | [HQY] | [AE] | [IKL] | [F] | [CS] | [DQR] | [FY] | [G] | [EHQ] | [IV] | [KLV] | [DN] | [I] | [HLV] |
Conservation: | 0.152 | -0.768 | -0.367 | 0.130 | -0.182 | -0.668 | -1.262 | 1.974 | -0.257 | -0.716 | 1.177 | 1.974 | -0.240 | 0.451 | -1.262 | 0.474 | 0.730 | -1.340 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a9n_B_23 | 1a9n | B | 27 | 44 | KRSLYALFSQFGHVVDIV | HHHHHHHHHTTS-EEEEE | aaaaaaaaaaaexxabbb |
1nu4_A_23 | 1nu4 | A | 27 | 44 | KKSLHAIFSRFGQILDIL | HHHHHHHHGGGS-EEEEE | aaaaaaaaaaaexxabbb |
1oia_A_23 | 1oia | A | 27 | 44 | KKSLYAIFSQFGQILDIL | HHHHHHHHGGGS-EEEEE | aaaaaaaaaaaexxabbx |
1oo0_B_86 | 1oo0 | B | 86 | 103 | EDEIQEKFCDYGEIKNIH | HHHHHHHHGGGS-EEEEE | aaaaaaaaaaaexxabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1nu4_A_23 | 1nu4 | A | MLAMALONIC ACID | K - 23 |
1nu4_A_23 | 1nu4 | A | MGMAGNESIUM ION | K - 27 |
1nu4_A_23 | 1nu4 | A | MLAMALONIC ACID | K - 27 |
1nu4_A_23 | 1nu4 | A | MLAMALONIC ACID | H - 31 |
1nu4_A_23 | 1nu4 | A | MLAMALONIC ACID | Q - 39 |
1nu4_A_23 | 1nu4 | A | MLAMALONIC ACID | I - 40 |
1nu4_A_23 | 1nu4 | A | MGMAGNESIUM ION | L - 41 |
1nu4_A_23 | 1nu4 | A | MLAMALONIC ACID | L - 41 |
1nu4_A_23 | 1nu4 | A | MGMAGNESIUM ION | D - 42 |
1nu4_A_23 | 1nu4 | A | MLAMALONIC ACID | D - 42 |
1nu4_A_23 | 1nu4 | A | MGMAGNESIUM ION | I - 43 |
1nu4_A_23 | 1nu4 | A | MLAMALONIC ACID | I - 43 |
1nu4_A_23 | 1nu4 | A | MGMAGNESIUM ION | L - 44 |
Clusters included in this Subclass |
CLUSTER: HE.4.286 |