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Information on SUBCLASS 4.1.5
Subclass Accession number: 2365
Subclass: 4.1.5 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0000287 (>75 %)  GO:0004246 (>50 %)  GO:0008233 (>50 %)  GO:0008237 (>50 %)  GO:0008238 (>50 %)  GO:0008241 (>50 %)  
SCOP : 55485 (>50 %)  55486 (>50 %)  55505 (>50 %)  
 Number of loops: 8

Average sequence ID (%) : 14.3 +/- 14.3
Average RMSD (Å) : 0.750 +/- 0.120

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXcXhpXp
(φψ)-conformation: aalabpaa
Pattern: x[aekl]xxxxx[EGK]x[flmvw][kst][ADEPQ][EKR][DEQS]x
Conservation:-1.053-0.469-0.474-0.702-0.544-0.967-0.4271.702-0.524-0.1080.5140.3762.0051.499-0.829
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b7g_O_3041b7g   O310324DAIRASMKLMSAEDSHHHHHHTT-S-HHHHaaaaaaalabxaaaa
1d2n_A_6811d2n   A685699LEALELLGNFKDKERHHHHHHHT-S-HHHHaaaaaaalaxxaaaa
1gky_*_1251gky   -129143KKRLEGRGTETEESIHHHHHHHS-S-HHHHaaaaaaavaxbaaaa
1jhg_A_451jhg   A5771IIEELLRGEMSQRELHHHHHHH--S-HHHHaaaaaaavaxxaaaa
1ki1_B_12641ki1   B12641278QKPLMESELLTEKEVHHHHHHHTSS-HHHHaaaaaaavabxaaaa
1l8a_A_1441l8a   A148162YARAFLEGRLTQEQLHHHHHHTTSS-HHHHaaaaaaavabxaaaa
1ufh_A_101ufh   A2539AEEKVKAGTWLPEDAHHHHHHHTSS-HHHHaaaaaaavabxaaaa
1urs_A_3711urs   A371385ILQNIIAGKVSPEQGHHHHHHHTSS-HHHHaaaaaaavabxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d2n_A_6811d2n   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER L - 691
1d2n_A_6811d2n   A     GOLGLYCEROL D - 696
1d2n_A_6811d2n   A     GOLGLYCEROL K - 697
1d2n_A_6811d2n   A     GOLGLYCEROL E - 698
1d2n_A_6811d2n   A     GOLGLYCEROL T - 700
1gky_*_1251gky   *     5GPGUANOSINE-5'-MONOPHOSPHATE R - 146
1jhg_A_451jhg   A     PO4PHOSPHATE ION E - 59
1jhg_A_451jhg   A     PO4PHOSPHATE ION R - 63
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1jhg_A_451jhg   A WBSL-TRYPTOPHAN BINDING SITE PLEASE NOTE THAT LEU 41 AND THR 44 FORM PART OF THE BINDING SITE ON THE SUBUNIT OF REPRESSOR THAT MAY BE GENERATED BY THE INDICATED SYMMETRY OPERATOR.R - 54
1jhg_A_451jhg   A WBSL-TRYPTOPHAN BINDING SITE PLEASE NOTE THAT LEU 41 AND THR 44 FORM PART OF THE BINDING SITE ON THE SUBUNIT OF REPRESSOR THAT MAY BE GENERATED BY THE INDICATED SYMMETRY OPERATOR.I - 57
1jhg_A_451jhg   A WBSL-TRYPTOPHAN BINDING SITE PLEASE NOTE THAT LEU 41 AND THR 44 FORM PART OF THE BINDING SITE ON THE SUBUNIT OF REPRESSOR THAT MAY BE GENERATED BY THE INDICATED SYMMETRY OPERATOR.I - 58

Clusters included in this Subclass
CLUSTER: HH.5.39