ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.8.2

Subclass Accession number: 240
Subclass: 3.8.2

PSSM

Type: HE alpha-beta
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
GO : GO:0000287 (>50 %)

Number of loops: 9

Average sequence ID (%) : 8.9 +/- 10.9
Average RMSD (Å) : 0.989 +/- 0.176

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	pXXXXXh
(φψ)-conformation:	aapapbb

Pattern:	x	x	x	[dehrsy]	[klv]	[afgklt]	[ADEKN]	x	[ailmt]	[deknp]	x	[afik]	x	[FILMVY]
Conservation:	-0.722	-0.579	-0.399	0.067	1.223	-1.048	1.684	-0.548	0.712	0.104	-1.070	-0.947	-0.363	1.887

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c4x_A_241	1c4x	A	242	255	TSLYLTKHLKHAEL	HHHHHHHH-SSEEE	aaaaaaaaxabbbb
1f0x_A_400	1f0x	A	407	420	WLVDYFKQAEGDFF	HHHHHHHHSS-EEE	aaaaaaaaxaxbbb
1iae_*_24	1iae	-	33	46	GMQELEEKTCIRFV	HHHHHHHHSS-EEE	aaaaaaaabaxbxb
1iup_A_229	1iup	A	231	244	SSLRLGELIDRAQL	HHHHHHHH-TTEEE	aaaaaaaaxaxbbb
1jx6_A_141	1jx6	A	143	156	FVEHVLDSTNTKLI	HHHHHHHH-S-EEE	aaaaaaaabaxxbb
1kfs_A_336	1kfs	A	341	354	AWIAKLEKAPVFAF	HHHHHHHHSSSEEE	aaaaaaaaxabbxb
1nv8_A_134	1nv8	A	135	148	IGVSVAKFSDAIVF	HHHHHHHHSS-EEE	aaaaaaaabaxxbb
1tfr_*_101	1tfr	-	111	124	VIDELKAYMPYIVM	HHHHHHHHSSSEEE	aaaaaaaaxabxbx
3pmg_A_339	3pmg	A	339	352	ALDRVANATKIALY	HHHHHHHTSSS-EE	aaaaaaaabaxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jx6_A_141	1jx6	A	CACALCIUM ION	E - 145
1jx6_A_141	1jx6	A	CACALCIUM ION	L - 148
1jx6_A_141	1jx6	A	CACALCIUM ION	D - 149
1kfs_A_336	1kfs	A	ZNZINC ION	D - 355
1kfs_A_336	1kfs	A	MGMAGNESIUM ION	D - 355
1kfs_A_336	1kfs	A	ZNZINC ION	T - 356
1kfs_A_336	1kfs	A	MGMAGNESIUM ION	T - 356
1kfs_A_336	1kfs	A	ZNZINC ION	E - 357
1kfs_A_336	1kfs	A	MGMAGNESIUM ION	E - 357
1nv8_A_134	1nv8	A	SAMS-ADENOSYLMETHIONINE	A - 134
1nv8_A_134	1nv8	A	SAMS-ADENOSYLMETHIONINE	I - 135
1nv8_A_134	1nv8	A	SAMS-ADENOSYLMETHIONINE	T - 150
1nv8_A_134	1nv8	A	SAMS-ADENOSYLMETHIONINE	D - 151

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1kfs_A_336	1kfs	A	EXOEXONUCLEASE ACTIVE SITE.	D - 355
1kfs_A_336	1kfs	A	EXOEXONUCLEASE ACTIVE SITE.	E - 357

Clusters included in this Subclass

CLUSTER: HE.4.40