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Information on SUBCLASS 5.39.1
Subclass Accession number: 400
Subclass: 5.39.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1.1 (>75 %)  1.1.1 (>75 %)  1.1.1.262
GO : GO:0003677 (>50 %)  GO:0003684 (>50 %)  GO:0016614 (>75 %)  GO:0016616 (>75 %)  GO:0050570 (>75 %)  
SCOP : 102656 (>75 %)  52539 (>50 %)  52540 (>50 %)  52686 (>50 %)  53658 (>75 %)  53659 (>75 %)  
 Number of loops: 3

Average sequence ID (%) : 24.4 +/- 33.9
Average RMSD (Å) : 0.700 +/- 0.265

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXhXXpXXX
(φψ)-conformation: aapbaapbb
Pattern: [EL][LTV][AP]x[IL]x[EHK][AEN][AL][PT][EP][ENY][SV]x[NV]
Conservation:-0.856-0.1050.807-0.5782.090-1.4880.668-0.7230.0481.2641.264-0.569-0.633-0.380-0.808
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e3m_A_6761e3m   A676690ETANILHNATEYSLVHHHHHHHH--TT-EEaaaaaaaaxbaaxxb
1ewq_A_6451ewq   A645659EVALILKEATENSLVHHHHHHHH--TTEEEaaaaaaaaxbaaxbb
1i7q_A_801i7q   A8094LLPLLDEALPPEVRNHHHHHHHHS-TTSEEaaaaaaaaxxaaxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e3m_A_6761e3m   A     MSESELENOMETHIONINE E - 676
1e3m_A_6761e3m   A     MSESELENOMETHIONINE T - 677
1e3m_A_6761e3m   A     MSESELENOMETHIONINE A - 678
1e3m_A_6761e3m   A     MSESELENOMETHIONINE N - 679
1e3m_A_6761e3m   A     MSESELENOMETHIONINE I - 680
1e3m_A_6761e3m   A     MSESELENOMETHIONINE L - 681
1e3m_A_6761e3m   A     MSESELENOMETHIONINE V - 690
1ewq_A_6451ewq   A     MSESELENOMETHIONINE E - 645
1ewq_A_6451ewq   A     MSESELENOMETHIONINE V - 646
1ewq_A_6451ewq   A     MSESELENOMETHIONINE A - 647
1ewq_A_6451ewq   A     MSESELENOMETHIONINE L - 648
1ewq_A_6451ewq   A     EDO1,2-ETHANEDIOL E - 652
1ewq_A_6451ewq   A     MSESELENOMETHIONINE L - 658

Clusters included in this Subclass
CLUSTER: HE.4.187