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Information on SUBCLASS 2.6.1
Subclass Accession number: 5414
Subclass: 2.6.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 27

Average sequence ID (%) : 10.9 +/- 16.2
Average RMSD (Å) : 0.607 +/- 0.260

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XpXXXX
(φψ)-conformation: aabpbb
Pattern: xx[adeknqrst][dehknqrsty]x[dehnpqrst][cfiltvy]x
Conservation:-0.169-0.6870.4190.106-0.821-0.3732.235-0.709
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1akz_*_1001akz   -112119ERKHYTVYHHHHS-EEaaaabxbb
1e5x_A_2471e5x   A251258ITAELPIYHHHHS-EEaaaabxbx
1e6c_A_861e6c   A9198MRAHGTVVHHHHHSEEaaaabxbb
1ek6_A_701ek6   A7683LFKKYSFMHHHH--EEaaaabxba
1g9m_G_3691g9m   G369376PEIVTHSFHHHHTEEEaaaabxxb
1iwd_A_1171iwd   A123130AVASQPVSHHHHS-EEaaaabxbx
1ixk_A_2551ixk   A261268ALDNFDVEHHHHSSEEaaaabxbb
1j2r_A_1831j2r   A183190YPRIARVRHHHHSEEEaaaabbbb
1jc9_A_1271jc9   A133140LTNQRNYMHHHHS-EEaaaabxbb
1jj2_F_101jj2   F2330ARDTGAVKHHHHS-EEaaaabbbb
1k4k_A_1201k4k   A123130ILDNAHLIHHHH-EEEaaaabxbb
1khq_A_1181khq   A124131SIANQPVSHHHHS-EEaaaabpbx
1kwm_A_201kwm   A2936LASTTQIDHHHHS-EEaaaabxbb
1lau_E_431lau   E5562RCQTEEVLHHHHS-EEaaaabxxb
1nnw_A_501nnw   A6067LTKKENVKHHHHS-EEaaaabxbb
1o0e_A_1161o0e   A122129AVAVQPSTHHHHS-EEaaaabpbx
1ogc_A_511ogc   A5865LAEEMAVEHHHHS-EEaaaabxba
1okb_A_1001okb   A112119ERSRHTVYHHHHS-EEaaaabxbb
1poi_B_1381poi   B141148IATYSNTIHHHHS-EEaaaabxbb
1ppo_*_1181ppo   -124131AIAKQPVSHHHHS-EEaaaabpbx
1qas_A_5371qas   A542549HNVSCLSRHHHHS-EEaaaabxbb
1qop_B_2701qop   B270277PLKHGRVGHHHHSEEEaaaabbxb
1ro2_A_1241ro2   A130137LCRKTLCTHHHHS-EEaaaabxbb
1uqt_A_1871uqt   A197204LSNLTRVTHHHHS-EEaaaabxbx
1uyr_A_17021uyr   A17181725AYHDIFTIHHHHS-EEaaaabxbb
1xo1_A_1051xo1   A115122CKTTFPTFHHTTS-EEaaaabwbb
2act_*_1212act   -127134AVTYQPVSHHHHS-EEaaaabxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e5x_A_2471e5x   A     MSESELENOMETHIONINE L - 247
1e5x_A_2471e5x   A     MSESELENOMETHIONINE I - 248
1e5x_A_2471e5x   A     MSESELENOMETHIONINE R - 249
1e5x_A_2471e5x   A     MSESELENOMETHIONINE E - 250
1e5x_A_2471e5x   A     MSESELENOMETHIONINE I - 251
1e5x_A_2471e5x   A     MSESELENOMETHIONINE E - 254
1e5x_A_2471e5x   A     MSESELENOMETHIONINE L - 255
1e5x_A_2471e5x   A     MSESELENOMETHIONINE L - 259
1ek6_A_701ek6   A     TMATETRAMETHYLAMMONIUM ION M - 83
1ek6_A_701ek6   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE H - 87
1g9m_G_3691g9m   G     IOH2-PROPANOL, ISOPROPANOL E - 370
1g9m_G_3691g9m   G     NAGN-ACETYL-D-GLUCOSAMINE V - 372
1g9m_G_3691g9m   G     NAGN-ACETYL-D-GLUCOSAMINE T - 373
1g9m_G_3691g9m   G     IOH2-PROPANOL, ISOPROPANOL S - 375
1g9m_G_3691g9m   G     IOH2-PROPANOL, ISOPROPANOL F - 376
1g9m_G_3691g9m   G     NAGN-ACETYL-D-GLUCOSAMINE N - 377
1g9m_G_3691g9m   G     IOH2-PROPANOL, ISOPROPANOL N - 377
1ixk_A_2551ixk   A     MSESELENOMETHIONINE V - 257
1ixk_A_2551ixk   A     MSESELENOMETHIONINE W - 260
1ixk_A_2551ixk   A     MSESELENOMETHIONINE F - 265
1j2r_A_1831j2r   A     MPD2-METHYL-2,4-PENTANEDIOL R - 185
1uyr_A_17021uyr   A     D1L2-[4-(2,4-DICHLOROPHENOXY)PHENOXY]PROPANOIC ACID L - 1705
1uyr_A_17021uyr   A     D1L2-[4-(2,4-DICHLOROPHENOXY)PHENOXY]PROPANOIC ACID S - 1708
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1okb_A_1001okb   A AC3CL BINDING SITE FOR CHAIN AR - 113
1uyr_A_17021uyr   A AC1D1L BINDING SITE FOR CHAIN AL - 1705

Clusters included in this Subclass
CLUSTER: HE.1.10
CLUSTER: HE.2.17
CLUSTER: HE.3.25