Information on SUBCLASS 5.19.1 |
Subclass Accession number: 6397
Subclass: 5.19.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 25.8 +/- 21.3 Average RMSD (Å) : 0.325 +/- 0.046 Consensus geometry
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Consensus Sequence: | XpXXpGGXX |
(φψ)-conformation: | bbpaaeebb |
Pattern: | x | [aerst] | x | [AEPST] | x | [AG] | [DG] | x | [aenqt] |
Conservation: | -0.623 | -0.559 | -0.235 | -0.074 | -0.849 | 1.776 | 1.661 | -0.506 | -0.590 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dxr_H_66 | 1dxr | H | 68 | 76 | FVLPHGGTV | EE-TTS-EE | xxxaaeebb |
1ff4_A_2 | 1ff4 | A | 5 | 13 | TTKSIGGVT | EE-TTSSEE | bxxaaeebb |
1hcz_*_177 | 1hcz | - | 183 | 191 | LRKEKGGYE | EE-TTS-EE | xxxaaeebb |
1hn0_A_296 | 1hn0 | A | 296 | 304 | HTLANGGTQ | EE-TTS-EE | bxbaaeebb |
1jb0_D_37 | 1jb0 | D | 39 | 47 | FEMPTAGAA | EE-TTSSEE | bbxaaMexb |
1nez_A_186 | 1nez | A | 192 | 200 | HARPEGDVT | EE-TTSSEE | bxxaaeebb |
1od3_A_43 | 1od3 | A | 45 | 53 | FSLPGGGSA | EE-TTSSEE | bxxaaeebb |
3ezm_A_17 | 3ezm | A | 22 | 30 | CERTNGGYN | EE-TTS-EE | bxxaaeebb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1od3_A_43 | 1od3 | A | BGCBETA-D-GLUCOSE | I - 44 |
1od3_A_43 | 1od3 | A | BGCBETA-D-GLUCOSE | F - 45 |
1od3_A_43 | 1od3 | A | CACALCIUM ION | L - 47 |
1od3_A_43 | 1od3 | A | CACALCIUM ION | G - 51 |
1od3_A_43 | 1od3 | A | CACALCIUM ION | S - 52 |
1od3_A_43 | 1od3 | A | CACALCIUM ION | A - 53 |
1od3_A_43 | 1od3 | A | BGCBETA-D-GLUCOSE | I - 54 |
1od3_A_43 | 1od3 | A | BGCBETA-D-GLUCOSE | G - 55 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1od3_A_43 | 1od3 | A | AC5BGC BINDING SITE FOR CHAIN A | I - 44 |
1od3_A_43 | 1od3 | A | AC4CA BINDING SITE FOR CHAIN A | S - 52 |
1od3_A_43 | 1od3 | A | AC2BGC BINDING SITE FOR CHAIN A | G - 55 |
Clusters included in this Subclass |
CLUSTER: HA.5.73 |