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Information on SUBCLASS 5.19.1
Subclass Accession number: 6397
Subclass: 5.19.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 25.8 +/- 21.3
Average RMSD (Å) : 0.325 +/- 0.046

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpXXpGGXX
(φψ)-conformation: bbpaaeebb
Pattern: x[aerst]x[AEPST]x[AG][DG]x[aenqt]
Conservation:-0.623-0.559-0.235-0.074-0.8491.7761.661-0.506-0.590
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dxr_H_661dxr   H6876FVLPHGGTVEE-TTS-EExxxaaeebb
1ff4_A_21ff4   A513TTKSIGGVTEE-TTSSEEbxxaaeebb
1hcz_*_1771hcz   -183191LRKEKGGYEEE-TTS-EExxxaaeebb
1hn0_A_2961hn0   A296304HTLANGGTQEE-TTS-EEbxbaaeebb
1jb0_D_371jb0   D3947FEMPTAGAAEE-TTSSEEbbxaaMexb
1nez_A_1861nez   A192200HARPEGDVTEE-TTSSEEbxxaaeebb
1od3_A_431od3   A4553FSLPGGGSAEE-TTSSEEbxxaaeebb
3ezm_A_173ezm   A2230CERTNGGYNEE-TTS-EEbxxaaeebb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1od3_A_431od3   A     BGCBETA-D-GLUCOSE I - 44
1od3_A_431od3   A     BGCBETA-D-GLUCOSE F - 45
1od3_A_431od3   A     CACALCIUM ION L - 47
1od3_A_431od3   A     CACALCIUM ION G - 51
1od3_A_431od3   A     CACALCIUM ION S - 52
1od3_A_431od3   A     CACALCIUM ION A - 53
1od3_A_431od3   A     BGCBETA-D-GLUCOSE I - 54
1od3_A_431od3   A     BGCBETA-D-GLUCOSE G - 55
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od3_A_431od3   A AC5BGC BINDING SITE FOR CHAIN AI - 44
1od3_A_431od3   A AC4CA BINDING SITE FOR CHAIN AS - 52
1od3_A_431od3   A AC2BGC BINDING SITE FOR CHAIN AG - 55

Clusters included in this Subclass
CLUSTER: HA.5.73