ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 2.5.1

Subclass Accession number: 7205
Subclass: 2.5.1

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 17

Average sequence ID (%) : 18.2 +/- 18.2
Average RMSD (Å) : 0.506 +/- 0.182

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	hXGpXX
(φψ)-conformation:	bbepaa

Pattern:	x	[fgilvwy]	x	[DG]	[adekrst]	x	[adegknqt]	[degknqt]	[acfglmtv]
Conservation:	-0.450	-0.176	-0.375	2.613	-0.113	-0.618	-0.494	0.015	-0.402

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1boo_A_28	1boo	A	30	38	MYIGDSLEL	EEES-HHHH	bbbexaaaa
1cs1_A_299	1cs1	A	303	311	ELDGDEQTL	EESS-HHHH	bxxebaaaa
1d4o_A_160	1d4o	A	162	170	MLLGDAKKT	EEES-HHHH	xbxepaaaa
1h1d_A_112	1h1d	A	114	122	ILNGASQDL	EEES-HHHH	xbxexaaaa
1id0_A_371	1id0	A	371	379	SFVGEQNDF	EEES-HHHH	Obbexaaaa
1j8f_A_317	1j8f	A	319	327	AWLGECDQG	EEES-HHHH	bbxexaaaa
1js3_A_408	1js3	A	412	420	RLKGSDGLN	EESS-HHHH	bxpexaaaa
1jsc_A_421	1jsc	A	422	430	AVEGDATTN	EEES-HHHH	bbxexaaaa
1khh_A_108	1khh	A	111	119	PLKGLWEEV	EEES-HHHH	wbxexaaaa
1kl7_A_205	1kl7	A	209	217	SVTGTFDNC	EESS-HHHH	xxxebaaaa
1ma3_A_229	1ma3	A	230	238	KIIGKAGEV	EEES-HHHH	bbbexaaaa
1mjf_A_135	1mjf	A	137	145	LTIGDGFEF	EEES-HHHH	bbxexaaaa
1o08_A_1184	1o08	A	1186	1194	IGVGRPEDL	EEES-HHHH	bxbexaaaa
1ozh_A_318	1ozh	A	319	327	ELVGDIAGT	EEES-HHHH	bbxepaaaa
1pno_A_445	1pno	A	447	455	MLFGDAKKM	EEES-HHHH	xbxexaaaa
1qfj_A_177	1qfj	A	177	184	.RTGTVLTA	.EES-HHHH	.xbebaaaa
1qjc_A_65	1qjc	A	69	77	GFSDLMANF	EE-S-HHHH	xbbexaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1boo_A_28	1boo	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	G - 33
1boo_A_28	1boo	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	D - 34
1boo_A_28	1boo	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	S - 35
1boo_A_28	1boo	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	L - 36
1d4o_A_160	1d4o	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 165
1d4o_A_160	1d4o	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	D - 166
1d4o_A_160	1d4o	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 167
1d4o_A_160	1d4o	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	K - 168
1h1d_A_112	1h1d	A	SAMS-ADENOSYLMETHIONINE	G - 117
1h1d_A_112	1h1d	A	SAMS-ADENOSYLMETHIONINE	A - 118
1h1d_A_112	1h1d	A	SAMS-ADENOSYLMETHIONINE	S - 119
1h1d_A_112	1h1d	A	SAMS-ADENOSYLMETHIONINE	Q - 120
1id0_A_371	1id0	A	MGMAGNESIUM ION	N - 385
1id0_A_371	1id0	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	N - 385
1id0_A_371	1id0	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	V - 386
1id0_A_371	1id0	A	MGMAGNESIUM ION	D - 388
1id0_A_371	1id0	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	D - 388
1id0_A_371	1id0	A	MGMAGNESIUM ION	N - 389
1id0_A_371	1id0	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	N - 389
1id0_A_371	1id0	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	A - 390
1id0_A_371	1id0	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	K - 392
1id0_A_371	1id0	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	Y - 393
1jsc_A_421	1jsc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 425
1jsc_A_421	1jsc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	D - 426
1jsc_A_421	1jsc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 427
1jsc_A_421	1jsc	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 428
1khh_A_108	1khh	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	G - 114
1khh_A_108	1khh	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	L - 115
1khh_A_108	1khh	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	W - 116
1khh_A_108	1khh	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	E - 117
1kl7_A_205	1kl7	A	MSESELENOMETHIONINE	V - 205
1kl7_A_205	1kl7	A	MSESELENOMETHIONINE	Q - 206
1kl7_A_205	1kl7	A	MSESELENOMETHIONINE	T - 207
1pno_A_445	1pno	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 450
1pno_A_445	1pno	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	D - 451
1pno_A_445	1pno	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 452
1pno_A_445	1pno	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	K - 453

Clusters included in this Subclass