ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.2.5

Subclass Accession number: 7337
Subclass: 4.2.5

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 57.6 +/- 4.9
Average RMSD (Å) : 0.467 +/- 0.208

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 45-90

rho (°): 135-180

Consensus Sequence:	hNXRhXXp
(φψ)-conformation:	bbabpbaa

Pattern:	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x	x
Conservation:	0.927	-0.652	1.980	-0.389	0.401	0.927	-0.257	1.453	-0.389	0.927	-0.915	-0.783	-1.310	-0.652	-0.915	1.980	-0.652	-0.520	-0.520	-0.652	-0.915	0.927

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c30_A_836	1c30	A	836	857	EVYLIEVNPRAARTVPFVSKAT	EEEEEEEE-S--TTHHHHHHHH	bxbxabbbabxbaaaaaaaaaa
1dv1_A_283	1dv1	A	283	304	EFYFIEMNTRIQVEHPVTEMIT	EEEEEEEESS--TTHHHHHHHH	bbbpabbxabxbaaaaaaaaaa
1dv1_B_283	1dv1	B	283	304	EFYFIEMNTRIQVEHPVTEMIT	EEEEEEEE-S--TTHHHHHHHH	bbbpabbxabxbaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1c30_A_836	1c30	A	MNMANGANESE (II) ION	I - 840
1c30_A_836	1c30	A	ADPADENOSINE-5'-DIPHOSPHATE	I - 840
1c30_A_836	1c30	A	MNMANGANESE (II) ION	E - 841
1c30_A_836	1c30	A	ADPADENOSINE-5'-DIPHOSPHATE	E - 841
1c30_A_836	1c30	A	MNMANGANESE (II) ION	N - 843
1c30_A_836	1c30	A	ADPADENOSINE-5'-DIPHOSPHATE	N - 843
1c30_A_836	1c30	A	MNMANGANESE (II) ION	R - 848
1c30_A_836	1c30	A	ADPADENOSINE-5'-DIPHOSPHATE	R - 848
1dv1_A_283	1dv1	A	PO4PHOSPHATE ION	N - 290
1dv1_A_283	1dv1	A	PO4PHOSPHATE ION	R - 292
1dv1_A_283	1dv1	A	PO4PHOSPHATE ION	I - 293
1dv1_A_283	1dv1	A	PO4PHOSPHATE ION	Q - 294
1dv1_A_283	1dv1	A	PO4PHOSPHATE ION	V - 295
1dv1_A_283	1dv1	A	PO4PHOSPHATE ION	E - 296

Clusters included in this Subclass

CLUSTER: EH.5.177