ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 9.3.1

Subclass Accession number: 8023
Subclass: 9.3.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 59.8 +/- 23.0
Average RMSD (Å) : 0.171 +/- 0.049

Consensus geometry

d (Å): 7

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	LAAXQhchppRhh
(φψ)-conformation:	bbaaaalbpbpbb

Pattern:	[G]	[L]	[A]	[A]	[PT]	[Q]	[ILV]	[DGN]	[IV]	[hs]	[KQ]	[QR]	[FIM]	[FIV]	[AV]	[IMV]
Conservation:	2.212	0.681	0.681	0.681	-0.236	1.447	-0.251	-0.840	0.310	-1.890	-0.053	0.083	-0.910	-0.706	-0.783	-0.426

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g2a_A_45	1g2a	A	45	60	GLAATQVDIHQRIIVI	EEEGGGGT--BSEEEE	bbbaaaavbxbxbbbb
1lm4_A_60	1lm4	A	60	75	GLAAPQINISKRMIAV	EEEGGGGT--BSEEEE	bbbaaaavbxbxbbbb
1lm6_A_72	1lm6	A	72	87	GLAAPQLDISKRIIAV	EEEGGGGT--BSEEEE	bbbaaaavbxbxbbbb
1lme_A_44	1lme	A	44	59	GLAAPQVGISQRFFVM	EEEGGGGT--BSEEEE	bbbaaaavbxbxbbbb
1lqy_A_60	1lqy	A	60	75	GLAAPQINVSKRMIAV	EEEGGGGT--BSEEEE	bbbaaaavbxbxbbbb
1n5n_A_46	1n5n	A	46	61	GLAATQVNVHKRIVVM	EEEGGGGT--BSEEEE	bbbaaaavbxbxbbbb
1rn5_A_48	1rn5	A	48	63	GLAAPQIGILKQIVVV	EEEGGGGT--BSEEEE	bbbaaaavbxbxbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1g2a_A_45	1g2a	A	BB2ACTINONIN	G - 45
1g2a_A_45	1g2a	A	BB2ACTINONIN	L - 46
1g2a_A_45	1g2a	A	BB2ACTINONIN	A - 47
1g2a_A_45	1g2a	A	NINICKEL (II) ION	Q - 50
1g2a_A_45	1g2a	A	BB2ACTINONIN	Q - 50
1lm4_A_60	1lm4	A	FEFE (III) ION	G - 60
1lm4_A_60	1lm4	A	CSWCYSTEINE-S-DIOXIDE	Q - 65
1lm4_A_60	1lm4	A	FEFE (III) ION	Q - 65
1lm6_A_72	1lm6	A	FEFE (III) ION	G - 72
1lm6_A_72	1lm6	A	CSWCYSTEINE-S-DIOXIDE	Q - 77
1lm6_A_72	1lm6	A	FEFE (III) ION	Q - 77
1lme_A_44	1lme	A	OCSCYSTEINESULFONIC ACID	G - 44
1lme_A_44	1lme	A	OCSCYSTEINESULFONIC ACID	Q - 49
1lqy_A_60	1lqy	A	NINICKEL (II) ION	G - 60
1lqy_A_60	1lqy	A	BB2ACTINONIN	G - 60
1lqy_A_60	1lqy	A	BB2ACTINONIN	L - 61
1lqy_A_60	1lqy	A	BB2ACTINONIN	A - 62
1lqy_A_60	1lqy	A	NINICKEL (II) ION	Q - 65
1lqy_A_60	1lqy	A	BB2ACTINONIN	Q - 65
1n5n_A_46	1n5n	A	ZNZINC ION	G - 46
1n5n_A_46	1n5n	A	GOLGLYCEROL	G - 46
1n5n_A_46	1n5n	A	GOLGLYCEROL	L - 47
1n5n_A_46	1n5n	A	ZNZINC ION	Q - 51

Clusters included in this Subclass

CLUSTER: HA.8.6