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Information on SUBCLASS 4.1.3
Subclass Accession number: 8408
Subclass: 4.1.3 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 14.7 +/- 15.6
Average RMSD (Å) : 0.807 +/- 0.334

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XhXhphXh
(φψ)-conformation: aabaappb
Pattern: [agiltv]xx[AGILV]xx[agiklmv]x[adep][adeknt][aciklv]x[CGILVW][acfgiklv][acdnstv]
Conservation:0.175-0.617-0.5490.549-0.609-0.105-0.199-0.6863.0450.2880.108-0.7090.897-1.077-0.511
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c0d_A_1781c0d   A186200GNAVLSVNPNLLIFVHHHHHTT-TTSEEEEaaaaaaabaaxxbbb
1fcq_A_1461fcq   A169183LKAAKRMRPAANWGYHHHHHHHSTTSEEEEaaaaaaabaaxbbbx
1fp1_D_2221fp1   D224238LELIISKYPLIKGINHHHHHHH-TT-EEEEaaaaaaabaaxxxbx
1gpj_A_621gpj   A6377EELGDLIHDDAWVKRHHHHHTT-TT-EEEEaaaaaaabaapxbbb
1h7e_A_1041h7e   A110124LLQGMRDDPALPVATHHHHHHH-TT--EEEaaaaaaabaaxwbbb
1iib_A_641iib   A6478LPEIQRLLPNKPVEVHHHHHHH-TTS-EEEaaaaaaabaabwbbx
1jsc_A_5281jsc   A532546AIGAQVAKPESLVIDHHHHHHH-TTSEEEEaaaaaaabaaxxbbb
1kyz_A_2131kyz   A215229INTIVSKYPTIKGINHHHHHHH-TTSEEEEaaaaaaabaaxxxbx
1l6w_A_651l6w   A7286ALKLRSIIADIVVKVHHHHHHHSTT-EEEEaaaaaaabaaxxxxb
1luc_A_551luc   A5973AAHLLGATETLNVGTHHHHHHH-SS-EEEEaaaaaaabaaxxbbb
1m3u_A_621m3u   A6983TAAVRRGAPNCLLLAHHHHHHH-TTSEEEEaaaaaaabaaxxbxb
1mzh_A_1441mzh   A144158VKLASSIAKKVKVCCHHHHHHH-SSSEEEEaaaaaaapaaxxbbb
1ozh_A_4251ozh   A429443AIGAWLVNPERKVVSHHHHHHHSTTSEEEEaaaaaaabaabxbbb
1qpo_A_1821qpo   A186200LRAVRNAAPDLPCEVHHHHHHH-TTS-EEEaaaaaaabaabpbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fp1_D_2221fp1   D     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 223
1fp1_D_2221fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE N - 223
1fp1_D_2221fp1   D     SAHS-ADENOSYL-L-HOMOCYSTEINE F - 239
1fp1_D_2221fp1   D     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 240
1jsc_A_5281jsc   A     TPPTHIAMINE DIPHOSPHATE D - 548
1jsc_A_5281jsc   A     MGMAGNESIUM ION G - 549
1jsc_A_5281jsc   A     TPPTHIAMINE DIPHOSPHATE G - 549
1kyz_A_2131kyz   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 214
1kyz_A_2131kyz   A     SAHS-ADENOSYL-L-HOMOCYSTEINE F - 230
1kyz_A_2131kyz   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 231
1l6w_A_651l6w   A     GOLGLYCEROL K - 85
1luc_A_551luc   A     EDO1,2-ETHANEDIOL A - 58
1luc_A_551luc   A     EDO1,2-ETHANEDIOL A - 59
1luc_A_551luc   A     EDO1,2-ETHANEDIOL H - 61
1luc_A_551luc   A     EDO1,2-ETHANEDIOL L - 62
1m3u_A_621m3u   A     MGMAGNESIUM ION D - 84
1m3u_A_621m3u   A     KPLKETOPANTOATE D - 84
1ozh_A_4251ozh   A     HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE S - 445
1ozh_A_4251ozh   A     MGMAGNESIUM ION G - 446
1ozh_A_4251ozh   A     HE32-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE G - 446

Clusters included in this Subclass
CLUSTER: HE.4.63
CLUSTER: HE.5.64