Information on SUBCLASS 6.10.2 |
Subclass Accession number: 8653
Subclass: 6.10.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 22.2 +/- 32.3 Average RMSD (Å) : 0.467 +/- 0.153 Consensus geometry
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Consensus Sequence: | pXXXpXcXhX |
(φψ)-conformation: | aapabaapbb |
Pattern: | [IP] | [EKR] | [AE] | [ACI] | [IKV] | [DE] | [AS] | [AKQ] | [PT] | [DS] | [DP] | [DK] | [FQ] | [CIV] | x | [MVW] | [AY] | [QR] |
Conservation: | -1.101 | 0.360 | -0.349 | -0.708 | -1.243 | 2.224 | 0.759 | -0.842 | 0.477 | 0.847 | 1.089 | 0.471 | -0.698 | 0.093 | -1.517 | -0.575 | -0.517 | 1.229 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1kbi_A_235 | 1kbi | A | 235 | 252 | PEEIIEAAPSDKQIQWYQ | HHHHHHT---SS--EEEE | aaaaaaapabaaxxbbbx |
1mum_A_134 | 1mum | A | 141 | 158 | IRAAVDAKTDPDFVIMAR | HHHHHHT-SSTTSEEEEE | aaaaaaapabaaxbbbxb |
1pym_A_135 | 1pym | A | 142 | 159 | IKACKDSQTDPDFCIVAR | HHHHHHT-SSTT-EEEEE | aaaaaaaxaxaaxbbbxx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1kbi_A_235 | 1kbi | A | FMNFLAVIN MONONUCLEOTIDE | Q - 252 |
1kbi_A_235 | 1kbi | A | MPD2-METHYL-2,4-PENTANEDIOL | L - 253 |
1mum_A_134 | 1mum | A | MGMAGNESIUM ION | R - 158 |
1pym_A_135 | 1pym | A | MSESELENOMETHIONINE | A - 158 |
1pym_A_135 | 1pym | A | MSESELENOMETHIONINE | R - 159 |
1pym_A_135 | 1pym | A | OXLOXALATE ION | R - 159 |
1pym_A_135 | 1pym | A | MGMAGNESIUM ION | R - 159 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1pym_A_135 | 1pym | A | PEPCATALYTIC SITE | R - 159 |
Clusters included in this Subclass |
CLUSTER: HE.7.131 |