ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.6.2

Subclass Accession number: 9109
Subclass: 5.6.2

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 18.9 +/- 26.1
Average RMSD (Å) : 0.562 +/- 0.185

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	XhchXXpXX
(φψ)-conformation:	aalababaa

Pattern:	x	[adv]	x	x	x	[afitv]	x	x	[degk]	x	x	x	[dns]	x	x	[aek]	x
Conservation:	-0.138	0.954	-0.300	-0.197	-0.514	0.067	0.251	-0.770	0.739	-0.848	-0.788	-0.323	2.422	-1.364	-0.441	1.914	-0.665

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cf2_O_305	1cf2	O	309	325	VDAVRAILEMEEDKYKS	HHHHHHHTTS-S-HHHH	aaaaaaaalabaxaaaa
1cf3_A_373	1cf3	A	376	392	WAEEAVARGGFHNTTAL	HHHHHHHTTS-S-HHHH	aaaaaaaavababaaaa
1ezj_A_4	1ezj	A	10	26	MATLLTSLGVIQSAQEF	HHHHHHHTTSSS-HHHH	aaaaaaaavababaaaa
1gpe_A_377	1gpe	A	380	396	WAEETVARGGFHNVTAL	HHHHHHHTTS-S-HHHH	aaaaaaaavababaaaa
1h3e_A_371	1h3e	A	371	387	VARLFTLAGLTPSNAEA	HHHHHHHTTS-S-HHHH	aaaaaaaavababaaaa
1h3f_A_371	1h3f	A	371	387	VARLFTLAGLTPSNAEA	HHHHHHHTTSSSSHHHH	aaaaaaaavababaaaa
1o17_A_282	1o17	A	292	308	TAVALFALDRVGDFREG	HHHHHHHTTSSSSHHHH	aaaaaaaalababaaaa
2tpt_*_270	2tpt	-	280	296	CVEMLISGKLAKDDAEA	HHHHHHHTTS-SSHHHH	aaaaaaaavabaxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cf3_A_373	1cf3	A	NAGN-ACETYL-D-GLUCOSAMINE	H - 387
1cf3_A_373	1cf3	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 388
1cf3_A_373	1cf3	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 389
1cf3_A_373	1cf3	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 390
1cf3_A_373	1cf3	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 391
1cf3_A_373	1cf3	A	NAGN-ACETYL-D-GLUCOSAMINE	I - 394
1cf3_A_373	1cf3	A	NAGN-ACETYL-D-GLUCOSAMINE	I - 403
1cf3_A_373	1cf3	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 404
1gpe_A_377	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 392
1gpe_A_377	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 393
1gpe_A_377	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 394
1gpe_A_377	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 395
1gpe_A_377	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 396
1gpe_A_377	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 398
1gpe_A_377	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 407
1gpe_A_377	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 408
1gpe_A_377	1gpe	A	NAGN-ACETYL-D-GLUCOSAMINE	D - 409

Clusters included in this Subclass

CLUSTER: HH.5.25