ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 9.13.1

Subclass Accession number: 9207
Subclass: 9.13.1

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 3

Average sequence ID (%) : 73.7 +/- -31.8
Average RMSD (Å) : 0.233 +/- 0.058

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 135-180

rho (°): 225-270

Consensus Sequence:	pAXEFAXSFXSXE
(φψ)-conformation:	aalbbpabaapaa

Pattern:	[L]	[KP]	[H]	[F]	[DE]	[A]	[GS]	[E]	[F]	[A]	[PT]	[S]	[F]	[DEG]	[S]	[EP]	[E]	[A]	[KR]
Conservation:	-0.112	-0.996	2.473	1.181	-0.296	-0.112	-0.959	0.534	1.181	-0.112	-0.996	-0.112	1.181	-1.620	-0.112	-1.123	0.534	-0.112	-0.421

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1frf_S_190	1frf	S	190	208	LPHFEASEFAPSFDSEEAK	HHHHHTT-B-S-SSSHHHH	aaaaaavbbxabaaxaaaa
1ubk_S_194	1ubk	S	194	212	LPHFDAGEFAPSFESEEAR	HHHHHHT-B-SSTTSHHHH	aaaaaavxbxabaaxaaaa
2frv_A_191	2frv	A	191	209	LKHFEAGEFATSFGSPEAK	HHHHHTT-B-SSTTSHHHH	aaaaaavbbxabaaxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1frf_S_190	1frf	S	FEFE (III) ION	L - 190
1frf_S_190	1frf	S	FS4IRON/SULFUR CLUSTER	L - 190
1frf_S_190	1frf	S	FS4IRON/SULFUR CLUSTER	P - 191
1frf_S_190	1frf	S	FEFE (III) ION	F - 193
1frf_S_190	1frf	S	FS4IRON/SULFUR CLUSTER	F - 193
1frf_S_190	1frf	S	FEFE (III) ION	F - 198
1frf_S_190	1frf	S	FS4IRON/SULFUR CLUSTER	F - 198
1ubk_S_194	1ubk	S	FS4IRON/SULFUR CLUSTER	L - 194
1ubk_S_194	1ubk	S	MPD2-METHYL-2,4-PENTANEDIOL	L - 194
1ubk_S_194	1ubk	S	FS4IRON/SULFUR CLUSTER	P - 195
1ubk_S_194	1ubk	S	MPD2-METHYL-2,4-PENTANEDIOL	P - 195
1ubk_S_194	1ubk	S	FS4IRON/SULFUR CLUSTER	F - 197
1ubk_S_194	1ubk	S	MPD2-METHYL-2,4-PENTANEDIOL	D - 198
1ubk_S_194	1ubk	S	FS4IRON/SULFUR CLUSTER	F - 202
2frv_A_191	2frv	A	FS4IRON/SULFUR CLUSTER	L - 191
2frv_A_191	2frv	A	FS4IRON/SULFUR CLUSTER	K - 192
2frv_A_191	2frv	A	FS4IRON/SULFUR CLUSTER	F - 194
2frv_A_191	2frv	A	FS4IRON/SULFUR CLUSTER	F - 199

Clusters included in this Subclass

CLUSTER: HH.9.51