ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 10.8.1

Subclass Accession number: 9224
Subclass: 10.8.1

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 71.2 +/- -26.6
Average RMSD (Å) : 0.233 +/- 0.058

Consensus geometry

d (Å): 25

delta (°): 45-90

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	DhVcVXXALcADPX
(φψ)-conformation:	aabpaaaaaappaa

Pattern:	[AEK]	[N]	[A]	[RT]	[LMY]	[IM]	[R]	[N]	[L]	[TV]	[LM]	[AG]	[AS]	[Q]	[Y]	[LM]	[H]	[D]	[H]	[IL]	[V]	[H]	[F]	[Y]	[H]	[L]	[H]	[A]	[L]	[D]	[FW]	[V]	[DN]	[V]	[AT]	[AN]	[A]	[L]	[KN]	[A]	[D]	[P]	[AN]	[K]	[A]	[A]	[KR]	[LV]	[A]	[ANS]	[DS]	[IL]
Conservation:	-1.540	0.897	-0.148	-1.159	-1.308	-0.747	0.375	0.897	-0.148	-1.076	-0.491	-0.828	-0.914	0.375	1.419	-0.560	1.941	0.897	1.941	-0.660	-0.148	1.941	0.897	1.419	1.941	-0.148	1.941	-0.148	-0.148	0.897	0.460	-0.148	-0.394	-0.148	-1.020	-1.488	-0.148	-0.148	-0.812	-0.148	0.897	1.419	-1.490	0.375	-0.148	-0.148	-0.400	-0.916	-0.148	-1.424	-0.972	-0.664

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1frf_L_97	1frf	L	97	148	ANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASI	HHHHHHHHHHHHHHHHHHHHHHHHTTTGGGT--GGGGGTS-HHHHHHHHHHH	aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaxbaaaaaaxxaaaaaaaaaaa
1ubk_L_106	1ubk	L	106	157	KNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAALKADPAKAAKVASSI	HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGT--TGGGGGS-HHHHHHHHHHH	aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaabxaaaaaaxxaaaaaaaaaaa
2frv_B_90	2frv	B	90	141	ENATLMRNLTMGAQYMHDHLVHFYHLHALDWVNVANALNADPAKAARLANDL	HHHHHHHHHHHHHHHHHHHHHHHHHTTGGGT--GGGGGGS-HHHHHHHHHHH	aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaabxaaaaaaxxaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ubk_L_106	1ubk	L	FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI)	D - 123
1ubk_L_106	1ubk	L	CMOCARBON MONOXIDE	D - 123
2frv_B_90	2frv	B	FCOCARBONMONOXIDE-(DICYANO) IRON	D - 107
2frv_B_90	2frv	B	OOXYGEN ATOM	D - 107

Clusters included in this Subclass