PDB: 1a3q Compound: nuclear factor-kappa-b p52 Classification: COMPLEX (TRANSCRIPTION FACTOR/DNA) Entry date in PDB: 1998-05-27 Resolution [Å]: 2.10 R-Factor: 0.219

CHAIN: A SWISS-PROT/TREMBL: Q00653    KEYWORD: 3D-structure    Activator    Alternative splicing    ANK repeat    Chromosomal translocation    Disease mutation    DNA-binding    Nuclear protein    Phosphorylation    Proto-oncogene    Repeat    Transcription regulation    Ubl conjugation    SCOP: b.1.18.1 All beta proteins    Immunoglobulin-like beta-sandwich    E set domains    NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain    p52 subunit of NF-kappa B (NFKB)    Human (Homo sapiens) SCOP: b.2.5.3 All beta proteins    Common fold of diphtheria toxin/transcription factors/cytochrome f    p53-like transcription factors    Rel/Dorsal transcription factors, DNA-binding domain    p52 subunit of NF-kappa B (NFKB), N-terminal domain    Human (Homo sapiens) GO:  nucleus    protein binding    transcription factor activity    regulation of transcription    regulation of transcription, DNA-dependent    signal transduction    CHAIN: B SWISS-PROT/TREMBL: Q00653    KEYWORD: 3D-structure    Activator    Alternative splicing    ANK repeat    Chromosomal translocation    Disease mutation    DNA-binding    Nuclear protein    Phosphorylation    Proto-oncogene    Repeat    Transcription regulation    Ubl conjugation    SCOP: b.1.18.1 All beta proteins    Immunoglobulin-like beta-sandwich    E set domains    NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain    p52 subunit of NF-kappa B (NFKB)    Human (Homo sapiens) SCOP: b.2.5.3 All beta proteins    Common fold of diphtheria toxin/transcription factors/cytochrome f    p53-like transcription factors    Rel/Dorsal transcription factors, DNA-binding domain    p52 subunit of NF-kappa B (NFKB), N-terminal domain    Human (Homo sapiens) GO:  nucleus    protein binding    transcription factor activity    regulation of transcription    regulation of transcription, DNA-dependent    signal transduction

Image Source: PDB

Loops in ArchDB40 clusters

1a3q_A_281 - HA => SUBCLASS : 3.5.1
1a3q_A_136 - EH => SUBCLASS : 1.1.16
1a3q_A_130 - AR => SUBCLASS : 1.1.14
1a3q_A_130 - AR => SUBCLASS : 2.1.8
1a3q_A_230 - AR => SUBCLASS : 3.9.2
1a3q_A_120 - AR => SUBCLASS : 4.7.1

Loops in ArchDB95 clusters

1a3q_A_136 - EH => SUBCLASS : 1.1.20
1a3q_A_136 - EH => SUBCLASS : 1.1.22
1a3q_A_130 - AR => SUBCLASS : 2.1.6
1a3q_A_230 - AR => SUBCLASS : 3.4.2
1a3q_A_120 - AR => SUBCLASS : 5.2.1
1a3q_A_237 - AR => SUBCLASS : 5.72.1
1a3q_A_245 - AR => SUBCLASS : 7.38.1
1a3q_A_286 - AR => SUBCLASS : 12.8.1
1a3q_A_281 - HA => SUBCLASS : 3.7.1

Loops not clustered in ArchDB

1a3q_A_39 - AR
1a3q_A_270 - AR
1a3q_A_217 - AR
1a3q_A_212 - AR
1a3q_A_207 - AR
1a3q_A_108 - AR
1a3q_A_89 - AR
1a3q_A_79 - AR
1a3q_A_54 - AR
1a3q_A_189 - HA
1a3q_A_258 - HA
1a3q_A_303 - HA
1a3q_A_168 - HE
1a3q_A_146 - HH

1a3q A - percentage of sequence identity: 100
1a3q B - percentage of sequence identity: 100
1bfs - - percentage of sequence identity: 64
1ikn C - percentage of sequence identity: 64
1nfi B - percentage of sequence identity: 64
1nfi D - percentage of sequence identity: 64
1u36 A - percentage of sequence identity: 62
1u3j A - percentage of sequence identity: 63
1u3y A - percentage of sequence identity: 62
1u3z A - percentage of sequence identity: 62
1u41 A - percentage of sequence identity: 63
1u41 B - percentage of sequence identity: 63
1u41 C - percentage of sequence identity: 63
1u41 D - percentage of sequence identity: 63
1u42 A - percentage of sequence identity: 62