PDB: 1gh0 Compound: c-phycocyanin alpha subunit Classification: PHOTOSYNTHESIS Entry date in PDB: 2001-06-06 Resolution [Å]: 2.20 R-Factor: 0.189

CHAIN: A SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: B SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis    CHAIN: C SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: D SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis    CHAIN: E SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: F SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis    CHAIN: G SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: H SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis    CHAIN: I SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: J SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis    CHAIN: K SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: L SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis    CHAIN: M SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: N SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis    CHAIN: O SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: P SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis    CHAIN: Q SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: R SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis    CHAIN: S SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: T SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis    CHAIN: U SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: V SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis    CHAIN: W SWISS-PROT/TREMBL: P72509    KEYWORD: 3D-structure    Bile pigment    Electron transport    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin alpha subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    photosynthesis    CHAIN: X SWISS-PROT/TREMBL: P72508    KEYWORD: 3D-structure    Bile pigment    Electron transport    Methylation    Photosynthesis    Phycobilisome    SCOP: a.1.1.3 All alpha proteins    Globin-like    Globin-like    Phycocyanin-like phycobilisome proteins    Phycocyanin beta subunit    Spirulina platensis GO:  light-harvesting complex (sensu Viridiplantae)    phycobilisome    electron transport    mannitol transport    photosynthesis

Image Source: PDB

Loops in ArchDB95 clusters

1gh0_B_76 - HH => SUBCLASS : 2.5.1
1gh0_B_76 - HH => SUBCLASS : 2.5.2
1gh0_A_105 - HH => SUBCLASS : 2.9.1
1gh0_A_115 - HH => SUBCLASS : 3.1.4
1gh0_A_115 - HH => SUBCLASS : 3.4.4
1gh0_B_4 - HH => SUBCLASS : 5.1.2
1gh0_A_4 - HH => SUBCLASS : 5.7.2
1gh0_A_65 - HH => SUBCLASS : 9.13.1

Loops not clustered in ArchDB

1gh0_A_21 - HH
1gh0_B_113 - HH
1gh0_B_103 - HH
1gh0_B_48 - HH
1gh0_B_34 - HH
1gh0_B_21 - HH
1gh0_A_126 - HH
1gh0_A_78 - HH
1gh0_A_48 - HH
1gh0_B_124 - HH

1cpc B - percentage of sequence identity: 80
1cpc L - percentage of sequence identity: 81
1f99 A - percentage of sequence identity: 77
1f99 B - percentage of sequence identity: 76
1f99 L - percentage of sequence identity: 76
1f99 N - percentage of sequence identity: 76
1gh0 B - percentage of sequence identity: 100
1gh0 D - percentage of sequence identity: 100
1gh0 F - percentage of sequence identity: 100
1gh0 H - percentage of sequence identity: 100
1gh0 J - percentage of sequence identity: 100
1gh0 L - percentage of sequence identity: 100
1gh0 N - percentage of sequence identity: 100
1gh0 P - percentage of sequence identity: 100
1gh0 R - percentage of sequence identity: 100
1gh0 T - percentage of sequence identity: 100
1gh0 V - percentage of sequence identity: 100
1gh0 X - percentage of sequence identity: 100
1ha7 B - percentage of sequence identity: 98
1ha7 D - percentage of sequence identity: 98
1ha7 F - percentage of sequence identity: 98
1ha7 H - percentage of sequence identity: 98
1ha7 J - percentage of sequence identity: 98
1ha7 L - percentage of sequence identity: 98
1ha7 N - percentage of sequence identity: 98
1ha7 P - percentage of sequence identity: 98
1ha7 R - percentage of sequence identity: 98
1ha7 T - percentage of sequence identity: 98
1ha7 V - percentage of sequence identity: 98
1ha7 X - percentage of sequence identity: 98
1i7y B - percentage of sequence identity: 81
1jbo A - percentage of sequence identity: 76
1jbo B - percentage of sequence identity: 81
1ktp B - percentage of sequence identity: 81
1on7 B - percentage of sequence identity: 81
1phn A - percentage of sequence identity: 74
1phn B - percentage of sequence identity: 76
2c7j B - percentage of sequence identity: 66
2c7k B - percentage of sequence identity: 66
2c7l B - percentage of sequence identity: 66