PDB: 1qdm Compound: prophytepsin Classification: HYDROLASE Entry date in PDB: 1999-07-16 Resolution [Å]: 2.30 R-Factor: 0.224

CHAIN: A SWISS-PROT/TREMBL: P42210    KEYWORD: 3D-structure    Aspartyl protease    Glycoprotein    Hydrolase    Signal    Zymogen    EC: 3.4.23.40 SCOP: a.64.1.2 All alpha proteins    Saposin-like    Saposin    Swaposin    (Pro)phytepsin    Barley (Hordeum vulgare) SCOP: b.50.1.2 All beta proteins    Acid proteases    Acid proteases    Pepsin-like    Plant acid proteinase, phytepsin    Barley (Hordeum vulgare) SCOP: b.50.1.2 All beta proteins    Acid proteases    Acid proteases    Pepsin-like    Plant acid proteinase, phytepsin    Barley (Hordeum vulgare) GO:  lysosome    aspartic-type endopeptidase activity    pepsin A activity    lipid metabolism    proteolysis and peptidolysis    sphingolipid metabolism    CHAIN: B SWISS-PROT/TREMBL: P42210    KEYWORD: 3D-structure    Aspartyl protease    Glycoprotein    Hydrolase    Signal    Zymogen    EC: 3.4.23.40 SCOP: a.64.1.2 All alpha proteins    Saposin-like    Saposin    Swaposin    (Pro)phytepsin    Barley (Hordeum vulgare) SCOP: b.50.1.2 All beta proteins    Acid proteases    Acid proteases    Pepsin-like    Plant acid proteinase, phytepsin    Barley (Hordeum vulgare) SCOP: b.50.1.2 All beta proteins    Acid proteases    Acid proteases    Pepsin-like    Plant acid proteinase, phytepsin    Barley (Hordeum vulgare) GO:  lysosome    aspartic-type endopeptidase activity    pepsin A activity    lipid metabolism    proteolysis and peptidolysis    sphingolipid metabolism    CHAIN: C SWISS-PROT/TREMBL: P42210    KEYWORD: 3D-structure    Aspartyl protease    Glycoprotein    Hydrolase    Signal    Zymogen    EC: 3.4.23.40 SCOP: a.64.1.2 All alpha proteins    Saposin-like    Saposin    Swaposin    (Pro)phytepsin    Barley (Hordeum vulgare) SCOP: b.50.1.2 All beta proteins    Acid proteases    Acid proteases    Pepsin-like    Plant acid proteinase, phytepsin    Barley (Hordeum vulgare) SCOP: b.50.1.2 All beta proteins    Acid proteases    Acid proteases    Pepsin-like    Plant acid proteinase, phytepsin    Barley (Hordeum vulgare) GO:  lysosome    aspartic-type endopeptidase activity    pepsin A activity    lipid metabolism    proteolysis and peptidolysis    sphingolipid metabolism

Image Source: PDB

Loops in ArchDB40 clusters

1qdm_A_279 - HE => SUBCLASS : 0.1.6
1qdm_A_116 - HE => SUBCLASS : 4.41.1
1qdm_A_83 - HA => SUBCLASS : 2.3.3
1qdm_A_321 - HA => SUBCLASS : 4.1.1
1qdm_A_229 - EH => SUBCLASS : 1.1.1
1qdm_A_229 - EH => SUBCLASS : 1.1.2
1qdm_A_273 - EH => SUBCLASS : 1.1.14
1qdm_A_7 - EH => SUBCLASS : 3.3.1
1qdm_A_124 - EH => SUBCLASS : 13.2.1
1qdm_A_218 - AR => SUBCLASS : 4.9.1
1qdm_A_29 - AR => SUBCLASS : 6.2.2
1qdm_A_254 - AR => SUBCLASS : 10.6.1

Loops in ArchDB95 clusters

1qdm_A_273 - EH => SUBCLASS : 1.1.8
1qdm_A_7 - EH => SUBCLASS : 3.1.5
1qdm_A_7 - EH => SUBCLASS : 3.1.10
1qdm_A_124 - EH => SUBCLASS : 13.1.1
1qdm_A_197 - AR => SUBCLASS : 1.5.1
1qdm_A_218 - AR => SUBCLASS : 4.7.1
1qdm_A_29 - AR => SUBCLASS : 6.20.1
1qdm_A_254 - AR => SUBCLASS : 10.2.1
1qdm_A_279 - HE => SUBCLASS : 0.1.6
1qdm_A_116 - HE => SUBCLASS : 4.33.3
1qdm_A_83 - HA => SUBCLASS : 2.3.6
1qdm_A_83 - HA => SUBCLASS : 2.3.10
1qdm_A_321 - HA => SUBCLASS : 4.1.1

Loops not clustered in ArchDB

1qdm_A_298 - AR
1qdm_A_43 - AR
1qdm_A_170 - AR
1qdm_A_209 - AR
1qdm_A_310 - EH
1qdm_A_99 - EH
1qdm_A_18 - HA
1qdm_A_294 - HA
1qdm_A_282 - HA
1qdm_A_266 - HA
1qdm_A_204 - HA
1qdm_A_182 - HA
1qdm_A_155 - HA
1qdm_A_75 - HA
1qdm_A_315 - HE
1qdm_A_89 - HE
1qdm_A_141 - HE
1qdm_A_17 - HE
1qdm_A_233 - HH
1qdm_A_4 - HH
1qdm_A_14 - HH
1qdm_A_27 - HH
1qdm_A_66 - HH

1b5f A - percentage of sequence identity: 67
1b5f B - percentage of sequence identity: 72
1b5f C - percentage of sequence identity: 67
1b5f D - percentage of sequence identity: 72
1lya A - percentage of sequence identity: 63
1lya C - percentage of sequence identity: 63
1lyb A - percentage of sequence identity: 63
1lyb C - percentage of sequence identity: 63
1lyw A - percentage of sequence identity: 63
1lyw C - percentage of sequence identity: 63
1lyw E - percentage of sequence identity: 63
1lyw G - percentage of sequence identity: 63
1qdm A - percentage of sequence identity: 100
1qdm B - percentage of sequence identity: 100
1qdm C - percentage of sequence identity: 100