Logo
Information on SUBCLASS 5.5.2
Subclass Accession number: 1381
Subclass: 5.5.2 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004730 (>75 %)  GO:0005524 (>50 %)  GO:0016829 (>75 %)  GO:0016835 (>75 %)  GO:0016836 (>75 %)  
SCOP : 100877 (>75 %)  52539 (>75 %)  52540 (>75 %)  55120 (>75 %)  69746 (>75 %)  
 Number of loops: 5

Average sequence ID (%) : 21.5 +/- 22.6
Average RMSD (Å) : 0.760 +/- 0.288

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: pXhXGhppp
(φψ)-conformation: bbppgppaa
Pattern: [LMV][AIL]x[FIK][gp]x[G][MPV][ST][HPS][EHNP][dv][AILV][klv][DEGQ]x[ACIV][EKR][GKQR][fik]
Conservation:0.6790.008-1.106-0.7520.034-1.0893.409-0.0781.006-0.151-0.055-0.4280.170-0.814-0.012-0.9410.0250.851-0.127-0.629
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1k8w_A_131k8w   A1635LLDKPQGMSSNDALQKVKRIEEEE-TT--HHHHHHHHHHHxxxxxxvxxaaaaaaaaaaa
1l0l_B_2041l0l   B204223MALIGLGVSHPVLKQVAEQFEEEEEESS-HHHHHHHHHHHbbbbbbvbxaaaaaaaaaaa
1q4r_A_111q4r   A1635LASFKDGVSPEKIEELIKGYEEEE-TT--HHHHHHHHHHHbbbxxpvxxaaaaaaaaaaa
1r3e_A_131r3e   A1635VAYKPKGPTSHDVVDEVRKKEEEE-SSS-HHHHHHHHHHHxxbbxxGxxaaaaaaaaaaa
1sgv_A_71sgv   A1029VIDKPAGMTSHDVVGRCRRIEEEE-TT--HHHHHHHHHHHxbxxwxgxxaaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1q4r_A_111q4r   A     MSESELENOMETHIONINE H - 13
1q4r_A_111q4r   A     MSESELENOMETHIONINE Y - 35
1q4r_A_111q4r   A     MSESELENOMETHIONINE A - 36

Clusters included in this Subclass
CLUSTER: EH.4.238
CLUSTER: EH.5.132