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PDB code:

Information on SUBCLASS 1.1.3

Subclass Accession number: 1594 Subclass: 1.1.3 Type: AR beta-beta link DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation SCOP : 51125 (>50 %)  51126 (>50 %)  51904 (>75 %)  51905 (>75 %)

Number of loops: 40 Average sequence ID (%) : 13.0 +/- 17.6 Average RMSD (Å) : 0.443 +/- 0.175 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bg2_*_44	1bg2	-	46	52	YAFDRVF	EE-SEEE	bxbabbx
1chu_A_191	1chu	A	195	201	CHAKAVV	EE-SEEE	bbbabbb
1chu_A_7	1chu	A	7	13	HSCDVLI	EE-SEEE	bbbabxb
1d5t_A_273	1d5t	A	275	281	ARCKQLI	EE-SEEE	bxbabbb
1d7y_A_225	1d7y	A	226	232	IAADMVV	EE-SEEE	bxbabbb
1dkr_A_218	1dkr	A	221	226	LIDDII.	EE-SEE.	xbbabb.
1efu_B_130	1efu	B	137	143	LEGDVLG	EE-SEEE	bbbabbb
1exm_A_275	1exm	A	275	281	KTLQEGI	EE-SEEE	bxbabbb
1fl2_A_437	1fl2	A	440	446	IELAGIF	EE-SEEE	bxbabbx
1g0u_A_157	1g0u	A	158	164	FPWKATA	EE-SEEE	bxbabbb
1g0u_B_157	1g0u	B	158	164	TGWKAIS	EE-SEEE	bbbabbb
1g0u_C_157	1g0u	C	158	164	SSWSAQT	EE-SEEE	bbbabbb
1g0u_G_156	1g0u	G	158	164	VGYKATA	EE-SEEE	bxbabbb
1hyu_A_437	1hyu	A	440	446	VALAGIF	EE-SEEE	bxbabbb
1i7p_A_167	1i7p	A	169	175	RTVKSVG	EE-SEEE	bbbabbx
1inl_A_29	1inl	A	32	38	MKMNRVI	EE-SEEE	bxbabba
1jnr_A_18	1jnr	A	21	27	VETDILI	EE-SEEE	bxbabbb
1jnr_A_202	1jnr	A	205	211	FKAKAVI	EE-SEEE	bbbabbb
1jsd_A_265	1jsd	A	268	274	CVVQCQT	EE-SEEE	bbbabbb
1k0i_A_146	1k0i	A	150	156	LDCDYIA	EE-SEEE	bxbabbb
1lvl_*_131	1lvl	-	133	139	IQCEHLL	EE-SEEE	bbbabbb
1lvl_*_4	1lvl	-	4	10	IQTTLLI	EE-SEEE	xbbabbb
1n6m_A_395	1n6m	A	396	402	FSFDQVF	EE-SEEE	bbbabbb
1nhp_*_232	1nhp	-	233	239	YDADLVV	EE-SEEE	bxbabbb
1nhp_*_99	1nhp	-	102	108	ENYDKLI	EE-SEEE	bxbabbb
1o5o_A_154	1o5o	A	157	162	LVALIA.	EE-SEE.	xbbabb.
1o94_A_631	1o94	A	633	639	IEFDSLV	EE-SEEE	bxbabbx
1ojj_A_177	1ojj	A	177	182	FVTPFI.	EE-SEE.	xxbabb.
1q1r_A_100	1q1r	A	101	107	LDYDRLV	EE-SEEE	bxbabbb
1q9i_A_125	1q9i	A	125	131	DTVDVVV	EE-SEEE	bbbabbb
1q9i_A_300	1q9i	A	304	310	VKADAVI	EE-SEEE	bxbabbb
1qla_A_204	1qla	A	207	213	YVAKGTL	EE-SEEE	bbbabbb
1qla_A_3	1qla	A	4	10	QYCDSLV	EE-SEEE	bbbabxb
1ry6_A_44	1ry6	A	52	58	FIVDKVF	EE-SEEE	bbbabbb
1trb_*_232	1trb	-	234	240	LDVAGLF	EE-SEEE	bxbabbb
1uir_A_16	1uir	A	19	25	RRMERVI	EE-SEEE	bxbabxa
1v04_A_256	1v04	A	262	268	LSFDTLV	EE-SSEE	xbbabxx
1vdc_*_231	1vdc	-	234	240	LKVSGLF	EE-SEEE	bxbabbb
2viu_A_274	2viu	A	277	283	CISECIT	EE-SEEE	bbbabbb
3grs_*_19	3grs	-	19	25	ASYDYLV	EE-SEEE	xbbabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jnr_A_18	1jnr	A	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 28
1jsd_A_265	1jsd	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 269
1jsd_A_265	1jsd	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 270
1jsd_A_265	1jsd	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 271
1lvl_*_4	1lvl	*	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 11
1ojj_A_177	1ojj	A	GLCGLUCOSE	F - 177
1ojj_A_177	1ojj	A	GALD-GALACTOSE	F - 177
1ojj_A_177	1ojj	A	PCAPYROGLUTAMIC ACID	F - 181
1q9i_A_125	1q9i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 132
1v04_A_256	1v04	A	CACALCIUM ION	D - 269
1v04_A_256	1v04	A	PO4PHOSPHATE ION	D - 269
1v04_A_256	1v04	A	CACALCIUM ION	N - 270
1v04_A_256	1v04	A	PO4PHOSPHATE ION	N - 270
1v04_A_256	1v04	A	CACALCIUM ION	I - 271
3grs_*_19	3grs	*	FADFLAVIN-ADENINE DINUCLEOTIDE	I - 26

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1v04_A_256	1v04	A	AC2CA BINDING SITE FOR CHAIN A	D - 269
1v04_A_256	1v04	A	AC2CA BINDING SITE FOR CHAIN A	N - 270

Clusters included in this Subclass

CLUSTER: AR.1.4

CLUSTER: AR.2.5

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