Logo
Information on SUBCLASS 1.1.3
Subclass Accession number: 1594
Subclass: 1.1.3 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 51125 (>50 %)  51126 (>50 %)  51904 (>75 %)  51905 (>75 %)  
Number of loops: 40

Average sequence ID (%) : 13.0 +/- 17.6
Average RMSD (Å) : 0.443 +/- 0.175

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XhpXh
(φψ)-conformation: bbabb
Pattern: xx[acfglmvwy][adeknqst]x[agiltv][afgiltv]
Conservation:-0.652-0.752-0.5311.015-1.1131.4590.574
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bg2_*_441bg2   -4652YAFDRVFEE-SEEEbxbabbx
1chu_A_1911chu   A195201CHAKAVVEE-SEEEbbbabbb
1chu_A_71chu   A713HSCDVLIEE-SEEEbbbabxb
1d5t_A_2731d5t   A275281ARCKQLIEE-SEEEbxbabbb
1d7y_A_2251d7y   A226232IAADMVVEE-SEEEbxbabbb
1dkr_A_2181dkr   A221226LIDDII.EE-SEE.xbbabb.
1efu_B_1301efu   B137143LEGDVLGEE-SEEEbbbabbb
1exm_A_2751exm   A275281KTLQEGIEE-SEEEbxbabbb
1fl2_A_4371fl2   A440446IELAGIFEE-SEEEbxbabbx
1g0u_A_1571g0u   A158164FPWKATAEE-SEEEbxbabbb
1g0u_B_1571g0u   B158164TGWKAISEE-SEEEbbbabbb
1g0u_C_1571g0u   C158164SSWSAQTEE-SEEEbbbabbb
1g0u_G_1561g0u   G158164VGYKATAEE-SEEEbxbabbb
1hyu_A_4371hyu   A440446VALAGIFEE-SEEEbxbabbb
1i7p_A_1671i7p   A169175RTVKSVGEE-SEEEbbbabbx
1inl_A_291inl   A3238MKMNRVIEE-SEEEbxbabba
1jnr_A_181jnr   A2127VETDILIEE-SEEEbxbabbb
1jnr_A_2021jnr   A205211FKAKAVIEE-SEEEbbbabbb
1jsd_A_2651jsd   A268274CVVQCQTEE-SEEEbbbabbb
1k0i_A_1461k0i   A150156LDCDYIAEE-SEEEbxbabbb
1lvl_*_1311lvl   -133139IQCEHLLEE-SEEEbbbabbb
1lvl_*_41lvl   -410IQTTLLIEE-SEEExbbabbb
1n6m_A_3951n6m   A396402FSFDQVFEE-SEEEbbbabbb
1nhp_*_2321nhp   -233239YDADLVVEE-SEEEbxbabbb
1nhp_*_991nhp   -102108ENYDKLIEE-SEEEbxbabbb
1o5o_A_1541o5o   A157162LVALIA.EE-SEE.xbbabb.
1o94_A_6311o94   A633639IEFDSLVEE-SEEEbxbabbx
1ojj_A_1771ojj   A177182FVTPFI.EE-SEE.xxbabb.
1q1r_A_1001q1r   A101107LDYDRLVEE-SEEEbxbabbb
1q9i_A_1251q9i   A125131DTVDVVVEE-SEEEbbbabbb
1q9i_A_3001q9i   A304310VKADAVIEE-SEEEbxbabbb
1qla_A_2041qla   A207213YVAKGTLEE-SEEEbbbabbb
1qla_A_31qla   A410QYCDSLVEE-SEEEbbbabxb
1ry6_A_441ry6   A5258FIVDKVFEE-SEEEbbbabbb
1trb_*_2321trb   -234240LDVAGLFEE-SEEEbxbabbb
1uir_A_161uir   A1925RRMERVIEE-SEEEbxbabxa
1v04_A_2561v04   A262268LSFDTLVEE-SSEExbbabxx
1vdc_*_2311vdc   -234240LKVSGLFEE-SEEEbxbabbb
2viu_A_2742viu   A277283CISECITEE-SEEEbbbabbb
3grs_*_193grs   -1925ASYDYLVEE-SEEExbbabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jnr_A_181jnr   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 28
1jsd_A_2651jsd   A     NAGN-ACETYL-D-GLUCOSAMINE V - 269
1jsd_A_2651jsd   A     NAGN-ACETYL-D-GLUCOSAMINE V - 270
1jsd_A_2651jsd   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 271
1lvl_*_41lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE I - 11
1ojj_A_1771ojj   A     GLCGLUCOSE F - 177
1ojj_A_1771ojj   A     GALD-GALACTOSE F - 177
1ojj_A_1771ojj   A     PCAPYROGLUTAMIC ACID F - 181
1q9i_A_1251q9i   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 132
1v04_A_2561v04   A     CACALCIUM ION D - 269
1v04_A_2561v04   A     PO4PHOSPHATE ION D - 269
1v04_A_2561v04   A     CACALCIUM ION N - 270
1v04_A_2561v04   A     PO4PHOSPHATE ION N - 270
1v04_A_2561v04   A     CACALCIUM ION I - 271
3grs_*_193grs   *     FADFLAVIN-ADENINE DINUCLEOTIDE I - 26
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1v04_A_2561v04   A AC2CA BINDING SITE FOR CHAIN AD - 269
1v04_A_2561v04   A AC2CA BINDING SITE FOR CHAIN AN - 270

Clusters included in this Subclass
CLUSTER: AR.1.4
CLUSTER: AR.2.5