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Information on SUBCLASS 5.3.1
Subclass Accession number: 1872
Subclass: 5.3.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004553 (>75 %)  GO:0016798 (>50 %)  
SCOP : 49898 (>75 %)  49899 (>75 %)  49978 (>75 %)  
Number of loops: 13

Average sequence ID (%) : 10.0 +/- 12.6
Average RMSD (Å) : 1.038 +/- 0.338

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: hXhXXXXXX
(φψ)-conformation: bbppaaabb
Pattern: [afilmv]x[aiklv][adepqst][dhpqst]xxxxx
Conservation:1.341-1.2561.7030.548-0.073-0.511-0.599-0.833-0.318-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dpt_A_951dpt   A100109FPLESWQIGKEEE-GGG-EEbxbbaaabxb
1fjr_A_291fjr   A2938LLVPAILTGEEEE-GGGEEEbxbxaaabbx
1fp5_A_4831fp5   A483492VQLPDARHSTEE--GGGEEEbxxxaaabbb
1g0x_A_1431g0x   A145153LNSQPHARG.EE--GGGEE.bxxxaaabb.
1gtt_A_2491gtt   A250258FLKAPNTLT.EEE-GGGEE.bbbxaaaxb.
1h54_A_971h54   A97106EPVDLAKDKIEE--TTTSEEbpxbaaaxxb
1k7w_A_2731k7w   A273282LTLSDAFSTGEE--GGG-EEbbxxaaabbb
1lug_A_311lug   A3139VDIDTHTAK.EE-TTT-EE.bxxxaaaxb.
1mve_A_2101mve   A210218VDLTDKNIY.EEE-GGGEE.bxxbaaabb.
1n67_A_4241n67   A424433ALIDQQNTSIEE-STTT-EExbbbaaabbb
1now_A_621now   A7079LHLAPENFYIEE--GGG-EEbbbbaaabbb
1p42_A_441p42   A4655IPARHEFVVHEESSGGGEEEbxxbaaaxab
1pfv_A_1341pfv   A134143MFLPDRFVKGEE--GGGEEEbxbxaaabbe
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fjr_A_291fjr   A     NAGN-ACETYL-D-GLUCOSAMINE L - 30
1fjr_A_291fjr   A     NAGN-ACETYL-D-GLUCOSAMINE P - 32
1fjr_A_291fjr   A     NAGN-ACETYL-D-GLUCOSAMINE A - 33
1gtt_A_2491gtt   A     CACALCIUM ION F - 250
1k7w_A_2731k7w   A     AS1ARGININOSUCCINATE T - 281
1k7w_A_2731k7w   A     AS1ARGININOSUCCINATE G - 282
1k7w_A_2731k7w   A     AS1ARGININOSUCCINATE A - 283
1mve_A_2101mve   A     MSESELENOMETHIONINE D - 211
1mve_A_2101mve   A     MSESELENOMETHIONINE L - 212
1mve_A_2101mve   A     MSESELENOMETHIONINE T - 213
1mve_A_2101mve   A     MSESELENOMETHIONINE Y - 218
1now_A_621now   A     NAGN-ACETYL-D-GLUCOSAMINE M - 65
1now_A_621now   A     NAGN-ACETYL-D-GLUCOSAMINE T - 66
1now_A_621now   A     NAGN-ACETYL-D-GLUCOSAMINE P - 67
1now_A_621now   A     NAGN-ACETYL-D-GLUCOSAMINE N - 68
1now_A_621now   A     NAGN-ACETYL-D-GLUCOSAMINE L - 69

Clusters included in this Subclass
CLUSTER: AR.4.57
CLUSTER: AR.5.48
CLUSTER: AR.6.61
CLUSTER: AR.6.65