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Information on SUBCLASS 1.2.12
Subclass Accession number: 2090
Subclass: 1.2.12 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005344 (>75 %)  
SCOP : 46457 (>75 %)  46458 (>75 %)  46463 (>75 %)  
 Number of loops: 10

Average sequence ID (%) : 9.3 +/- 11.2
Average RMSD (Å) : 0.470 +/- 0.157

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXpXX
(φψ)-conformation: aabaa
Pattern: xx[acfklv]xxx[denrt][kpr]xx[adgr]
Conservation:0.143-0.409-0.619-0.148-0.680-0.7470.1852.781-0.103-0.7140.312
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aor_A_2141aor   A225235VNKLRNDPVAGHHHHHHSHHHHaaaaaaxaaaa
1bdb_*_2301bdb   -231241AYVFFATRGDAHHHHHH-HHHHaaaaaaxaaaa
1cza_N_4811cza   N494504EMELGLRKQTHHHHHHHSHHHHaaaaaaxaaaa
1dpg_A_1881dpg   A189199AALRFGNPIFDHHHHHT-HHHHaaaaaabaaaa
1f5q_B_1641f5q   B178188IFCALCDGRSAHHHHHH-HHHHaaaaaabaaaa
1j7n_A_2101j7n   A220230AFAYYIEPQHRHHHHHHSHHHHaaaaaaxaaaa
1k0r_A_1861k0r   A191201KLFSLEVPEIAHHHHHH-HHHHaaaaaabaaaa
1m2d_A_271m2d   A3545MEKIQTDPQLFHHHHHH-HHHHaaaaaabaaaa
1ofw_A_971ofw   A102112EQQTKERRECAHHHHHHSHHHHaaaaaabaaaa
1q3e_A_5091q3e   A509519RKLVASMPLFAHHHHHH-HHHHaaaaaabaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ofw_A_971ofw   A     HECHEME C C - 97
1ofw_A_971ofw   A     HECHEME C V - 98
1ofw_A_971ofw   A     HECHEME C C - 100
1ofw_A_971ofw   A     HECHEME C H - 101
1ofw_A_971ofw   A     HECHEME C E - 102
1ofw_A_971ofw   A     HECHEME C Q - 103
1ofw_A_971ofw   A     HECHEME C Q - 104
1ofw_A_971ofw   A     HECHEME C T - 105
1ofw_A_971ofw   A     HECHEME C R - 108
1ofw_A_971ofw   A     HECHEME C R - 109
1ofw_A_971ofw   A     HECHEME C E - 110
1ofw_A_971ofw   A     HECHEME C C - 111
1ofw_A_971ofw   A     HECHEME C A - 112
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AC - 97
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AC - 100
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AH - 101
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AQ - 104
1ofw_A_971ofw   A AC4HEC BINDING SITE FOR CHAIN AT - 105

Clusters included in this Subclass
CLUSTER: HH.0.45
CLUSTER: HH.1.42