ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.19

Subclass Accession number: 2768
Subclass: 2.1.19

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 22.0 +/- 18.8
Average RMSD (Å) : 0.586 +/- 0.297

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	Xhpphp
(φψ)-conformation:	bbabaa

Pattern:	[fiklv]	[AEKRT]	[ilv]	[EKNRTY]	[AKST]	[AIP]	[DE]	[ADEQ]	[AL]	[ADEP]	[adep]	[AFKTV]	x	[DERS]	x	[AV]
Conservation:	-1.101	-0.414	0.376	-0.638	0.262	0.338	2.486	0.086	1.207	0.149	-1.029	-0.926	-1.056	0.233	-1.017	1.047

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1e4e_A_182	1e4e	A	182	197	KKVNSADELDYAIESA	EEE-SGGGHHHHHHHH	bxbabaaaaaaaaaaa
1nm2_A_293	1nm2	A	295	310	LALKTPDDLDAARELV	EE--SGGGHHHHHHHH	bbxabaaaaaaaaaaa
1oi4_A_171	1oi4	A	172	187	VTSRTPDDLPAFNREA	EEESSGGGHHHHHHHH	bbbabaaaaaaaaaaa
1ozh_A_134	1ozh	A	136	151	IEVTAPDALAEVVSNA	EE--SGGGHHHHHHHH	bbxabaaaaaaaaaaa
1ozh_A_511	1ozh	A	513	528	FAVESAEALEPTLRAA	EE--SGGGHHHHHHHH	bbxabaaaaaaaaaaa
1pox_A_512	1pox	A	514	529	FRVNKIEQLPDVFEQA	EEE-BGGGHHHHHHHH	bbbNbaaaaaaaaaaa
1zpd_A_135	1zpd	A	136	151	EAIYTPEEAPAKIDHV	EEE-SGGGHHHHHHHH	bxbabaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e4e_A_182	1e4e	A	GOLGLYCEROL	K - 183
1e4e_A_182	1e4e	A	GOLGLYCEROL	N - 185
1e4e_A_182	1e4e	A	GOLGLYCEROL	E - 195
1e4e_A_182	1e4e	A	GOLGLYCEROL	S - 196
1zpd_A_135	1zpd	A	CITCITRIC ACID	A - 146
1zpd_A_135	1zpd	A	CITCITRIC ACID	D - 149
1zpd_A_135	1zpd	A	CITCITRIC ACID	H - 150
1zpd_A_135	1zpd	A	CITCITRIC ACID	V - 151
1zpd_A_135	1zpd	A	CITCITRIC ACID	K - 153
1zpd_A_135	1zpd	A	CITCITRIC ACID	T - 154
1zpd_A_135	1zpd	A	CITCITRIC ACID	R - 157

Clusters included in this Subclass

CLUSTER: EH.5.30