ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 17.1.1

Subclass Accession number: 3622
Subclass: 17.1.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 5.3 (>75 %)  5.3 (>75 %)  5.3.1 (>75 %)  5.3.1 (>75 %)  5.3.1.5 5.3.1.5
GO : GO:0000287 (>75 %)  GO:0000287 (>75 %)  GO:0003676 (>75 %)  GO:0003677 (>75 %)  GO:0003677 (>75 %)  GO:0004518 (>75 %)  GO:0004518 (>75 %)  GO:0004519 (>75 %)  GO:0004519 (>75 %)  GO:0009045 (>75 %)  GO:0009045 (>75 %)  GO:0016788 (>75 %)  GO:0016788 (>75 %)  GO:0016853 (>75 %)  GO:0016853 (>75 %)  GO:0016860 (>75 %)  GO:0016860 (>75 %)  GO:0016861 (>75 %)  GO:0016861 (>75 %)
SCOP : 51658 (>75 %)  51658 (>75 %)  51665 (>75 %)  51665 (>75 %)

Number of loops: 6

Average sequence ID (%) : 56.9 +/- 24.8
Average RMSD (Å) : 0.333 +/- 0.052

Consensus geometry

d (Å): 21

delta (°): 0-45

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	TXNLFppPXFXpGhXTSXcXX
(φψ)-conformation:	bbpaaapaaaaaeaaapapaa

Pattern:	[MW]	[AGV]	[T]	[AGT]	[N]	[L]	[F]	[ST]	[DHN]	[P]	[agv]	[F]	[KV]	[DH]	[G]	[AG]	[f]	[T]	[AS]	[cnr]	[DN]	[pr]	[DSW]	[IV]	[FR]	[AR]	[FY]	[AS]	[AFIL]	[AR]	[KQ]	[STV]	[IKL]	[EHKR]	[ANQT]	[ILM]	[DE]	[IL]	[AGT]	[AKV]	[E]
Conservation:	0.114	-1.065	1.181	-0.817	1.719	0.644	1.719	-0.036	-0.162	2.256	-1.505	1.719	-0.627	0.122	1.719	-0.159	-0.407	1.181	-0.048	-1.433	0.478	-1.018	-1.052	0.415	-0.734	-0.577	1.292	-0.101	-0.961	-0.570	0.188	-0.903	-0.955	-0.597	-1.070	-0.129	0.656	0.147	-0.800	-1.006	1.181

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a0c_A_135	1a0c	A	138	178	WGTANLFSNPRFVHGASTSCNADVFAYSAAQVKKALEITKE	EEE---SSSGGGTT-STT-S-HHHHHHHHHHHHHHHHHHHH	bbbbxaNaxaaaaaeaaaxabaaaaaaaaaaaaaaaaaaaa
1bxb_A_87	1bxb	A	87	127	MVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAE	EEE---SSSGGGGG-STT-SSHHHHHHHHHHHHHHHHHHHH	bbbxxaaapaaaaaeaaaxaxaaaaaaaaaaaaaaaaaaaa
1bxc_A_87	1bxc	A	87	127	MVTGNLFSDPGFKDGGFTSRDPWVRAYAFRKSLETMDLGAE	EEE---SSSGGGTT-STT-SSHHHHHHHHHHHHHHHHHHHH	bbbxxaaapaaaaaeaaaxaxaaaaaaaaaaaaaaaaaaaa
1mnz_A_88	1mnz	A	88	128	MATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVE	EEE---SSSGGGTT-STT-SSHHHHHHHHHHHHHHHHHHHH	bbbbxaNaxaaaaaeaaapaxaaaaaaaaaaaaaaaaaaaa
1xim_A_88	1xim	A	88	128	MVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAE	EEE---SSSGGGTT-STT-SSHHHHHHHHHHHHHHHHHHHH	bbbbxaaaxaaaaaeaaapaxaaaaaaaaaaaaaaaaaaaa
4xia_A_84	4xia	A	87	127	MVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAE	EEE---SSSGGGTT-STT-SSHHHHHHHHHHHHHHHHHHHH	bbbbxaNaxaaaaaeaaaxaxaaaaaaaaaaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a0c_A_135	1a0c	A	COCOBALT (II) ION	W - 138
1mnz_A_88	1mnz	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	M - 88
1mnz_A_88	1mnz	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	T - 90
1mnz_A_88	1mnz	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	T - 91
1mnz_A_88	1mnz	A	MPD2-METHYL-2,4-PENTANEDIOL	N - 92
1mnz_A_88	1mnz	A	TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL	F - 94
1mnz_A_88	1mnz	A	MPD2-METHYL-2,4-PENTANEDIOL	F - 94
1mnz_A_88	1mnz	A	MPD2-METHYL-2,4-PENTANEDIOL	T - 95
1xim_A_88	1xim	A	XYLD-XYLITOL	T - 90
1xim_A_88	1xim	A	XYLD-XYLITOL	T - 91
1xim_A_88	1xim	A	XYLD-XYLITOL	F - 94
4xia_A_84	4xia	A	SORD-SORBITOL	M - 87
4xia_A_84	4xia	A	SORD-SORBITOL	T - 89
4xia_A_84	4xia	A	SORD-SORBITOL	T - 90
4xia_A_84	4xia	A	SORD-SORBITOL	F - 93

Clusters included in this Subclass