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Information on SUBCLASS 1.2.6
Subclass Accession number: 3658
Subclass: 1.2.6 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 23

Average sequence ID (%) : 9.5 +/- 15.4
Average RMSD (Å) : 0.474 +/- 0.184

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: XhXXX
(φψ)-conformation: bbabb
Pattern: xxxx[cfilmpvy][adgpst]xx
Conservation:-1.0002.045-0.509-1.155-0.1850.275-0.267-0.203
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dkr_A_2181dkr   A219226AILIDDIIEEEE-SEExbxbbabb
1dkr_A_2461dkr   A247254VYACCTHPEEEE-SEEbbbbbabx
1e4e_A_851e4e   A8794EINHVDVAEEEE-SEEbxbxbabb
1g6s_A_31g6s   A512TLQPIARVEE----EEbxxpbabb
1gz8_A_751gz8   A7986VFEFLHQDEEE--SEEbbpxbabb
1hcb_*_1121hcb   -112117..VKYSAE..EE-SEE..xxxabb
1hpg_A_1211hpg   A121127.TQDISSA.EEE--EE.bbxbabb
1i24_A_2881i24   A290297VFNQFTEQEEEE-SEEbbxbbabx
1jlr_A_1901jlr   A190197IIFVNILAEEEE-SEExbxxbabb
1k6j_A_2151k6j   A215222RIALTFETEEEE-SEEbbxxbabb
1o5o_A_1261o5o   A127134VFLLDPMLEEEE-SEEbbbbbabb
1ob3_A_751ob3   A7885VFEHLDQDEEE--SEEbbpxbabb
1pmq_A_1411pmq   A145152VMELMDANEEE--SEEbbpxxabb
1ps9_A_6111ps9   A613620QVLAVDNVEEE--SEEbbxxbabb
1q41_A_1271q41   A131138VLDYVPETEEE--SEExbxbbabb
1qy7_A_911qy7   A9299FVSPVDQTEEEE--EEbbbxbabb
1r3c_A_1031r3c   A105112VTHLMGADEEE--SEEbbxxxabx
1sgp_E_1221sgp   E122127..QDITSA..EE--EE..xxbabb
1ul3_A_901ul3   A9299FISPVDSVEEEE--EEbbbxbabb
1vgy_A_2471vgy   A247252..VIPGEL..EE-SEE..bxxabb
2sfa_*_882sfa   -8894.YRDITGA.EEE--EE.bbxxabb
2sga_*_1212sga   -121127.YQDITTA.EEE--EE.bbxbabb
3grs_*_193grs   -1924..ASYDYL..EE-SEE..xbbabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e4e_A_851e4e   A     GOLGLYCEROL Y - 86
1e4e_A_851e4e   A     GOLGLYCEROL N - 89
1e4e_A_851e4e   A     GOLGLYCEROL H - 90
1gz8_A_751gz8   A     MBP1-[(2-AMINO-6,9-DIHYDRO-1H-PURIN-6-YL)OXY]-3-METHYL-2-BUTANOL F - 80
1gz8_A_751gz8   A     MBP1-[(2-AMINO-6,9-DIHYDRO-1H-PURIN-6-YL)OXY]-3-METHYL-2-BUTANOL E - 81
1gz8_A_751gz8   A     MBP1-[(2-AMINO-6,9-DIHYDRO-1H-PURIN-6-YL)OXY]-3-METHYL-2-BUTANOL F - 82
1gz8_A_751gz8   A     MBP1-[(2-AMINO-6,9-DIHYDRO-1H-PURIN-6-YL)OXY]-3-METHYL-2-BUTANOL L - 83
1gz8_A_751gz8   A     MBP1-[(2-AMINO-6,9-DIHYDRO-1H-PURIN-6-YL)OXY]-3-METHYL-2-BUTANOL H - 84
1gz8_A_751gz8   A     MBP1-[(2-AMINO-6,9-DIHYDRO-1H-PURIN-6-YL)OXY]-3-METHYL-2-BUTANOL Q - 85
1hcb_*_1121hcb   *     ZNZINC ION H - 119
1hcb_*_1121hcb   *     BCTBICARBONATE ION H - 119
1hcb_*_1121hcb   *     BCTBICARBONATE ION A - 121
1o5o_A_1261o5o   A     U5PURIDINE-5'-MONOPHOSPHATE D - 131
1o5o_A_1261o5o   A     U5PURIDINE-5'-MONOPHOSPHATE P - 132
1o5o_A_1261o5o   A     U5PURIDINE-5'-MONOPHOSPHATE M - 133
1o5o_A_1261o5o   A     U5PURIDINE-5'-MONOPHOSPHATE L - 134
1pmq_A_1411pmq   A     880CYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL -3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE L - 144
1pmq_A_1411pmq   A     880CYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL -3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE V - 145
1pmq_A_1411pmq   A     880CYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL -3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE M - 146
1pmq_A_1411pmq   A     880CYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL -3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE E - 147
1pmq_A_1411pmq   A     880CYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL -3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE L - 148
1pmq_A_1411pmq   A     880CYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL -3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE M - 149
1pmq_A_1411pmq   A     880CYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL -3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE D - 150
1pmq_A_1411pmq   A     880CYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL -3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE A - 151
1pmq_A_1411pmq   A     880CYCLOHEXYL-{4-[5-(3,4-DICHLOROPHENYL)-2-PIPERIDIN-4-YL -3-PROPYL-3H-IMIDAZOL-4-YL]-PYRIMIDIN-2-YL}AMINE N - 152
1q41_A_1271q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME L - 132
1q41_A_1271q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME D - 133
1q41_A_1271q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME Y - 134
1q41_A_1271q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME V - 135
1q41_A_1271q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME P - 136
1q41_A_1271q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME E - 137
1q41_A_1271q41   A     IXM(Z)-1H,1'H-[2,3']BIINDOLYLIDENE-3,2'-DIONE-3-OXIME T - 138
1qy7_A_911qy7   A     NINICKEL (II) ION P - 95
1qy7_A_911qy7   A     NINICKEL (II) ION V - 96
1qy7_A_911qy7   A     NINICKEL (II) ION D - 97
1qy7_A_911qy7   A     NINICKEL (II) ION Q - 98
1ul3_A_901ul3   A     GOLGLYCEROL K - 90
1ul3_A_901ul3   A     GOLGLYCEROL F - 92
3grs_*_193grs   *     FADFLAVIN-ADENINE DINUCLEOTIDE I - 26
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gz8_A_751gz8   A MBPMBP BINDING SITE FOR CHAIN AF - 80
1gz8_A_751gz8   A MBPMBP BINDING SITE FOR CHAIN AF - 82
1gz8_A_751gz8   A MBPMBP BINDING SITE FOR CHAIN AL - 83

Clusters included in this Subclass
CLUSTER: AR.1.22
CLUSTER: AR.2.122
CLUSTER: AR.2.56
CLUSTER: AR.3.108
CLUSTER: AR.3.98
CLUSTER: AR.4.260