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Information on SUBCLASS 3.1.1
Subclass Accession number: 3743
Subclass: 3.1.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 47

Average sequence ID (%) : 8.0 +/- 12.7
Average RMSD (Å) : 0.662 +/- 0.272

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXXXXXX
(φψ)-conformation: bbabpbb
Pattern: xxxx[adegknqrst]xxxxx
Conservation:-1.4161.2180.566-0.1821.455-0.584-0.264-0.794-1.000-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1agi_*_701agi   -7180RISKSEFQITEEESS-EEEEbbxabxbxbb
1bpy_A_1871bpy   A187195.SSGDMDVLL.EESSEEEEE.bxabbbbxb
1ciu_*_5731ciu   -577586NILTGNQICVEE-SSSEEEExxxabpxbxb
1dar_*_4841dar   -485494ETITKPVDVEEE-SS-EEEEbbbabwbbbb
1dy5_A_721dy5   A7382YQSYSTMSITEE-SS-EEEEbbxaxxbxbb
1dyt_A_711dyt   A7281HRSRFRVPLLEE-SS-EEEEbbxabxbwbb
1e0t_A_1411e0t   A144152CKVLNNGDL.EEE-S-EEE.bbxabxbxx.
1e21_A_721e21   A7382YKSNSSMHITEE-SS-EEEEbbxabxbxbb
1edq_A_531edq   A5564KVKNAADVSVEE-SSEEEEEbxbabxxbbb
1ee6_A_31ee6   A311TVVHETIRV.EEESS-EEE.bxxabpxxb.
1fny_A_321fny   A3238.LQLTNVV...EE-S-EE...xxabpbb..
1g24_A_1661g24   A167176RLEYGYISTSEEESS-EEEEbbbaxxbxbb
1giq_A_3301giq   A331340ITYPNFISTSEEE-S-EEEEbbbaxxbxbb
1gpi_A_1971gpi   A197204GTGSYGTC..EE-S-EEE..bbbabbbb..
1gv7_A_711gv7   A7281YISKSSFQVTEE-SS-EEEEbbxabxbxbb
1h5z_A_3241h5z   A326334RVAKGEFEV.EEE-S-EEE.bbxabbbbb.
1h6l_A_3311h6l   A334341AQNGENID..EEESS-EE..bxbabxbb..
1i7p_A_1671i7p   A169178RTVKSVGMIAEE-SEEEEEEbbbabbxbbb
1iz5_A_601iz5   A6170YEVVEPETIGEEESS-EEEEbbbabwbbbx
1izo_A_2921izo   A295303ALVKKDFVW.EEE-S-EEE.bbxabpbbb.
1jae_*_4361jae   -436444.SCTGKSVTV.EESS-EEEE.bxabxbbxx
1jfb_A_2911jfb   A292300RTAKEDVMI.EEESS-EEE.bbxabpbxb.
1kqf_A_7001kqf   A700706.YALEDLY...EESS-EE...bxabxbb..
1m07_A_571m07   A6069VLSTTRFQLNEE-SS-EEEEbxpabxbxbb
1mo9_A_1711mo9   A173180FKAKNLIL..EEBS-EEE..bbbabbbx..
1mvh_A_2381mvh   A238245QFISQYRL..EE-SS-EE..bxbabpbx..
1mvq_A_1541mvq   A154160.LQLTRVS...EESS-EE...xbabxbb..
1n1x_A_721n1x   A7382YQSKSTMRITEE-SS-EEEEbbxabxbxbb
1n67_A_4821n67   A482490.QITTPYIVV.EE-S-EEEE.bbabxbbbb
1n97_A_2711n97   A273281RRLERPLLL.EEESS-EEE.bbxabpbxb.
1o9w_A_531o9w   A5867GKVDLPVVGSEEE-S-EEEEbbbaxxxaeb
1odo_A_2921odo   A295302RYAVTDIA..EEESS-EE..bbxabpbx..
1ojq_A_1301ojq   A131140YRENGYSSTQEEESS-EEEEbbbaxxbxbb
1onc_*_551onc   -5766VLTTSEFYLSEE-SS-EEEEbxpaxxbxbb
1pkl_A_1601pkl   A163172CTVTNSHTISEEE-S-EEEEbbxabxbxbx
1qs1_A_3781qs1   A379388KEDKGYMSTSEEESS-EEEEbbbaxxbxbb
1qzq_A_5311qzq   A532541LMIRSYELGVEEE-SBEEEEbbbabbbbbb
1rwr_A_1661rwr   A167174VKLQGAVS..EEE-S-EE..bbbabxbb..
1rwr_A_2401rwr   A241249VRQLGSLSS.EEE-S-EEE.bbbaxxbbb.
1rz0_A_1231rz0   A134143KITEQDPLLFEE----B-EEbbbaxxxxbb
1tul_*_241tul   -2735FIIEDEYYL.EEE-S-EEE.bxxabpbbb.
1tyv_*_1431tyv   -144151LLIDRDYN..EEE-S-EE..bbxabpbx..
1un3_A_691un3   A7079RISKSSFQVTEEESS-EEEEbbxaxxbxbb
1uyr_A_17241uyr   A17261733TLVTCRSV..EEESS-EE..bbxabpbb..
1wbf_A_311wbf   A3137.LELTKVV...EESS-EE...xxabxbb..
2rsp_A_732rsp   A7483RKSRDMIELGEEESS-EEEEbbxaxxbxbb
3tss_*_613tss   -6674TKRIKKSQH.EEESS--EE.bbxabxxbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 187
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 188
1bpy_A_1871bpy   A     MGMAGNESIUM ION S - 188
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE G - 189
1bpy_A_1871bpy   A     MGMAGNESIUM ION G - 189
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 190
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE M - 191
1bpy_A_1871bpy   A     MGMAGNESIUM ION M - 191
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 192
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 192
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 192
1dy5_A_721dy5   A     IASASPARTYL GROUP C - 72
1dy5_A_721dy5   A     IPAISOPROPYL ALCOHOL C - 72
1dy5_A_721dy5   A     ACTACETATE ION D - 83
1dy5_A_721dy5   A     ACTACETATE ION C - 84
1dy5_A_721dy5   A     ACTACETATE ION R - 85
1dyt_A_711dyt   A     CITCITRIC ACID R - 73
1dyt_A_711dyt   A     CITCITRIC ACID S - 74
1dyt_A_711dyt   A     CITCITRIC ACID R - 75
1dyt_A_711dyt   A     CITCITRIC ACID F - 76
1dyt_A_711dyt   A     CITCITRIC ACID R - 77
1dyt_A_711dyt   A     CITCITRIC ACID V - 78
1dyt_A_711dyt   A     CITCITRIC ACID P - 79
1giq_A_3301giq   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 332
1giq_A_3301giq   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 333
1giq_A_3301giq   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE P - 334
1giq_A_3301giq   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 335
1giq_A_3301giq   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 336
1giq_A_3301giq   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 338
1giq_A_3301giq   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 339
1giq_A_3301giq   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 340
1h5z_A_3241h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 324
1h5z_A_3241h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 325
1h5z_A_3241h5z   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 326
1h6l_A_3311h6l   A     CACALCIUM ION Q - 335
1h6l_A_3311h6l   A     CACALCIUM ION N - 336
1h6l_A_3311h6l   A     CACALCIUM ION G - 337
1h6l_A_3311h6l   A     CACALCIUM ION E - 338
1h6l_A_3311h6l   A     CACALCIUM ION N - 339
1h6l_A_3311h6l   A     CACALCIUM ION I - 340
1h6l_A_3311h6l   A     CACALCIUM ION D - 341
1izo_A_2921izo   A     PAMPALMITOLEIC ACID F - 292
1izo_A_2921izo   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 293
1izo_A_2921izo   A     PAMPALMITOLEIC ACID L - 293
1jfb_A_2911jfb   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 291
1jfb_A_2911jfb   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 292
1jfb_A_2911jfb   A     GOLGLYCEROL R - 292
1jfb_A_2911jfb   A     GOLGLYCEROL K - 295
1n97_A_2711n97   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 271
1n97_A_2711n97   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 272
1n97_A_2711n97   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 273
1n97_A_2711n97   A     EGLETHYLENE GLYCOL R - 273
1n97_A_2711n97   A     EGLETHYLENE GLYCOL R - 277
1odo_A_2921odo   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 292
1odo_A_2921odo   A     PIM4-PHENYL-1H-IMIDAZOLE L - 292
1odo_A_2921odo   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 295
1rz0_A_1231rz0   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 123
1rz0_A_1231rz0   A     MSESELENOMETHIONINE L - 125
1rz0_A_1231rz0   A     MSESELENOMETHIONINE F - 126
1rz0_A_1231rz0   A     MSESELENOMETHIONINE V - 130
1rz0_A_1231rz0   A     MSESELENOMETHIONINE T - 131
1rz0_A_1231rz0   A     MSESELENOMETHIONINE D - 132
1rz0_A_1231rz0   A     MSESELENOMETHIONINE I - 133
1rz0_A_1231rz0   A     MSESELENOMETHIONINE I - 135
1rz0_A_1231rz0   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 143
1uyr_A_17241uyr   A     D1L2-[4-(2,4-DICHLOROPHENOXY)PHENOXY]PROPANOIC ACID V - 1733
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 190
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 192
1h6l_A_3311h6l   A AC2STRUCTURAL CA 402 BINDING SITE FOR CHAIN AN - 336
1h6l_A_3311h6l   A AC2STRUCTURAL CA 402 BINDING SITE FOR CHAIN AE - 338
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AN - 339
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AI - 340
1h6l_A_3311h6l   A AC1STRUCTURAL CA 401 BINDING SITE FOR CHAIN AD - 341

Clusters included in this Subclass
CLUSTER: AR.3.9
CLUSTER: AR.4.8
CLUSTER: AR.5.32