Information on SUBCLASS 3.2.5 |
Subclass Accession number: 3770
Subclass: 3.2.5 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 20 Average sequence ID (%) : 8.5 +/- 12.7 Average RMSD (Å) : 0.575 +/- 0.116 Consensus geometry
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Consensus Sequence: | hXXXXhX |
(φψ)-conformation: | bbaaabb |
Pattern: | x | x | [fhilmvw] | [dehknpqrt] | x | x | x | [ailtv] | x |
Conservation: | -1.000 | -1.338 | 0.682 | 0.256 | -0.682 | 0.091 | -0.215 | 1.913 | -0.706 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dyp_A_67 | 1dyp | A | 67 | 75 | WSWKNENAT | EEE-GGGEE | bbxbaaabb |
1fit_*_8 | 1fit | - | 8 | 16 | HLIKPSVVF | EEE-GGGEE | bxbxaaaxa |
1fjr_A_29 | 1fjr | A | 29 | 37 | LLVPAILTG | EEE-GGGEE | bxbxaaabb |
1flj_A_32 | 1flj | A | 32 | 39 | .ELHTKDIR | .EE-GGGEE | .xxbaaabb |
1g29_1_284 | 1g29 | 1 | 287 | 295 | FGIRPEDLY | EEE-GGGEE | bbbxaaabb |
1gsa_*_34 | 1gsa | - | 36 | 44 | HYMEMGDLY | EEE-GGGEE | bxbbaaaxb |
1gtt_A_249 | 1gtt | A | 250 | 258 | FLKAPNTLT | EEE-GGGEE | bbbxaaaxb |
1izn_B_57 | 1izn | B | 59 | 67 | YLLCDYNRD | EEE-GGGEE | bbbbaaabb |
1jd0_A_32 | 1jd0 | A | 32 | 39 | .DLHSDILQ | .EE-GGGEE | .xbbaaabb |
1keq_A_32 | 1keq | A | 32 | 39 | .NIQWKDSV | .EE-GGGEE | .xxbaaaxb |
1mve_A_210 | 1mve | A | 210 | 218 | VDLTDKNIY | EEE-GGGEE | bxxbaaabb |
1nni_1_134 | 1nni | 1 | 134 | 142 | LVLDPVHID | EEE-GGGEE | bbbxaaabx |
1ntv_A_104 | 1ntv | A | 106 | 114 | HHHAVHEIS | EEE-GGGEE | bbbxaaaxa |
1o4y_A_79 | 1o4y | A | 79 | 87 | TIFNAPQAW | EEE-GGGEE | xbpbaaabb |
1o4z_A_115 | 1o4z | A | 115 | 123 | TEWKRDRSY | EEE-GGGEE | xbxbaaabb |
1oxx_K_271 | 1oxx | K | 274 | 282 | IGIRPEDVK | EEE-GGGEE | bbbxaaabb |
1p3r_A_112 | 1p3r | A | 114 | 122 | HEHPVNKIS | EEE-GGGEE | bbbxaaaxa |
1p42_A_44 | 1p42 | A | 46 | 54 | IPARHEFVV | EESSGGGEE | bxxbaaaxa |
1pfv_A_134 | 1pfv | A | 134 | 142 | MFLPDRFVK | EE--GGGEE | bxbxaaabb |
2ayh_*_33 | 2ayh | - | 33 | 40 | .TWRANNVN | .EE-GGGEE | .bxbaaabb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dyp_A_67 | 1dyp | A | CDCADMIUM ION | E - 72 |
1fit_*_8 | 1fit | * | MSESELENOMETHIONINE | S - 13 |
1fit_*_8 | 1fit | * | MSESELENOMETHIONINE | V - 14 |
1fjr_A_29 | 1fjr | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 30 |
1fjr_A_29 | 1fjr | A | NAGN-ACETYL-D-GLUCOSAMINE | P - 32 |
1fjr_A_29 | 1fjr | A | NAGN-ACETYL-D-GLUCOSAMINE | A - 33 |
1g29_1_284 | 1g29 | 1 | MGMAGNESIUM ION | R - 290 |
1g29_1_284 | 1g29 | 1 | MGMAGNESIUM ION | E - 292 |
1g29_1_284 | 1g29 | 1 | MGMAGNESIUM ION | D - 293 |
1gtt_A_249 | 1gtt | A | CACALCIUM ION | F - 250 |
1mve_A_210 | 1mve | A | MSESELENOMETHIONINE | D - 211 |
1mve_A_210 | 1mve | A | MSESELENOMETHIONINE | L - 212 |
1mve_A_210 | 1mve | A | MSESELENOMETHIONINE | T - 213 |
1mve_A_210 | 1mve | A | MSESELENOMETHIONINE | Y - 218 |
1nni_1_134 | 1nni | 1 | FMNFLAVIN MONONUCLEOTIDE | P - 138 |
1o4z_A_115 | 1o4z | A | EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID | W - 117 |
1oxx_K_271 | 1oxx | K | IODIODIDE ION | R - 271 |
1oxx_K_271 | 1oxx | K | IODIODIDE ION | I - 273 |
Clusters included in this Subclass |
CLUSTER: AR.3.63 |
CLUSTER: AR.4.148 |
CLUSTER: AR.4.65 |
CLUSTER: AR.5.126 |
CLUSTER: AR.5.40 |