ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.18.1

Subclass Accession number: 3944
Subclass: 4.18.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 11

Average sequence ID (%) : 26.7 +/- 30.0
Average RMSD (Å) : 0.645 +/- 0.211

Consensus geometry

d (Å): 13

delta (°): 0-45

theta (°): 45-90

rho (°): 180-225

Consensus Sequence:	hXXXXXhX
(φψ)-conformation:	bbagppbb

Pattern:	[gy]	x	[GQS]	x	x	[AEGPT]	[CFGY]	x	[CFLWY]	[ivy]
Conservation:	-0.059	-1.032	1.200	-1.188	1.543	-0.465	0.050	-1.280	0.412	0.820

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a4e_A_211	1a4e	A	211	220	GYSGHTYKWS	EE--S-EEEE	bbaGxxbbbb
1dgf_A_214	1dgf	A	214	223	GYGSHTFKLV	EE--S-EEEE	bbaGxxbbbb
1e93_A_193	1e93	A	193	202	GFGSHTYSFI	EE--S-EEEE	bbaGxxbbbb
1gwe_A_199	1gwe	A	199	208	GYGSHTYLWV	EE--S-EEEE	bbaGxxbbbb
1m7s_A_216	1m7s	A	216	225	GNGVHAYKLV	EE--S-EEEE	bbaGxxbbxb
1nsc_A_222	1nsc	A	222	231	RTQESACNCI	EE-SS--EEE	bbavbpxbbb
1p80_A_271	1p80	A	271	280	GFGIHTFRLI	EE--S-EEEE	bbaGxxbbbb
1qwl_A_195	1qwl	A	195	204	GFGSHTFSLI	EE--S-EEEE	bbaGxpbbbb
1usr_A_295	1usr	A	299	308	YPGVGGGSFI	EE-BS--EEE	bxagpxbbxb
1v3e_A_315	1v3e	A	319	328	YPSVGPGIYY	EE-BS--EEE	bxagxxbbbb
2bat_*_224	2bat	-	224	233	RTQESECVCI	EE-SS--EEE	bbavbxxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a4e_A_211	1a4e	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 212
1a4e_A_211	1a4e	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 213
1a4e_A_211	1a4e	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 214
1a4e_A_211	1a4e	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 215
1dgf_A_214	1dgf	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 215
1dgf_A_214	1dgf	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	Y - 215
1dgf_A_214	1dgf	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 216
1dgf_A_214	1dgf	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 217
1dgf_A_214	1dgf	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 218
1e93_A_193	1e93	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 194
1e93_A_193	1e93	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 195
1e93_A_193	1e93	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 196
1e93_A_193	1e93	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 197
1e93_A_193	1e93	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 199
1gwe_A_199	1gwe	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 200
1gwe_A_199	1gwe	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 201
1gwe_A_199	1gwe	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 202
1gwe_A_199	1gwe	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 203
1m7s_A_216	1m7s	A	HEMPROTOPORPHYRIN IX CONTAINING FE	N - 217
1m7s_A_216	1m7s	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 218
1m7s_A_216	1m7s	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 219
1m7s_A_216	1m7s	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 220
1nsc_A_222	1nsc	A	SIAO-SIALIC ACID	R - 222
1nsc_A_222	1nsc	A	SIAO-SIALIC ACID	T - 223
1nsc_A_222	1nsc	A	SIAO-SIALIC ACID	E - 225
1nsc_A_222	1nsc	A	NAGN-ACETYL-D-GLUCOSAMINE	I - 231
1p80_A_271	1p80	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 272
1p80_A_271	1p80	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 273
1p80_A_271	1p80	A	HEMPROTOPORPHYRIN IX CONTAINING FE	I - 274
1p80_A_271	1p80	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 275
1qwl_A_195	1qwl	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 196
1qwl_A_195	1qwl	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 197
1qwl_A_195	1qwl	A	HEMPROTOPORPHYRIN IX CONTAINING FE	S - 198
1qwl_A_195	1qwl	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 199
1usr_A_295	1usr	A	CACALCIUM ION	W - 295
1usr_A_295	1usr	A	CACALCIUM ION	V - 296
1usr_A_295	1usr	A	CACALCIUM ION	A - 297
1usr_A_295	1usr	A	DAN2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID	Y - 299
1v3e_A_315	1v3e	A	CACALCIUM ION	Y - 315
1v3e_A_315	1v3e	A	CACALCIUM ION	A - 316
1v3e_A_315	1v3e	A	CACALCIUM ION	A - 317
1v3e_A_315	1v3e	A	ZMRZANAMIVIR	Y - 319
1v3e_A_315	1v3e	A	ZMRZANAMIVIR	V - 322
2bat_*_224	2bat	*	SIAO-SIALIC ACID	R - 224
2bat_*_224	2bat	*	SIAO-SIALIC ACID	E - 227
2bat_*_224	2bat	*	NAGN-ACETYL-D-GLUCOSAMINE	I - 233

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gwe_A_199	1gwe	A	AC2SO4 BINDING SITE FOR CHAIN A	Y - 200
1usr_A_295	1usr	A	AC2DAN BINDING SITE FOR CHAIN A	Y - 299

Clusters included in this Subclass

CLUSTER: AR.4.55

CLUSTER: AR.6.78