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Information on SUBCLASS 4.21.1
Subclass Accession number: 3949
Subclass: 4.21.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 26.7 +/- 24.1
Average RMSD (Å) : 0.700 +/- 0.515

Consensus geometry
d (Å): 17 delta (°): 0-45 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: pXhpXXpX
(φψ)-conformation: bbpababb
Pattern: x[DSY][AST][PY][KR][FLTY][akqs][HNWY]x[GSV]x[flm]
Conservation:-0.638-0.2480.4191.4622.192-0.329-0.8070.3810.234-1.109-0.857-0.700
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gqi_A_1451gqi   A147158SSAPRLQHRVVNEE--S-SEEEEEbbbxababbbbb
1jak_A_1431jak   A146157EDTPRYAWRSAMEE--S-SEEEEEbbbxababbbbb
1now_A_1871now   A195206IDSPRFSHRGILEE--S-SEEEEEbbbxababbbbx
1qba_*_3261qba   -333344SDAPRFPYRGIFEE--S-SEEEEEbbbxababbbbb
1qpb_A_2981qpb   A298309SYSYKTKNIVEFEE--S---EEEEbbbxaxaxbbxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gqi_A_1451gqi   A     EDO1,2-ETHANEDIOL L - 146
1gqi_A_1451gqi   A     EDO1,2-ETHANEDIOL S - 148
1jak_A_1431jak   A     IFG(2R,3R,4S,5R)-2-ACETAMIDO-3,4-DIHYDROXY-5-HYDROXYMETHYL-PIPERIDINIUM D - 159
1now_A_1871now   A     NAGN-ACETYL-D-GLUCOSAMINE N - 190
1now_A_1871now   A     GOLGLYCEROL I - 195
1now_A_1871now   A     GOLGLYCEROL D - 196
1now_A_1871now   A     IFG(2R,3R,4S,5R)-2-ACETAMIDO-3,4-DIHYDROXY-5-HYDROXYMETHYL-PIPERIDINIUM D - 208
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gqi_A_1451gqi   A AC4EDO BINDING SITE FOR CHAIN AS - 148

Clusters included in this Subclass
CLUSTER: AR.5.98