Information on SUBCLASS 4.39.1 |
Subclass Accession number: 3971
Subclass: 4.39.1 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 14.4 +/- 14.6 Average RMSD (Å) : 0.725 +/- 0.403 Consensus geometry
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Consensus Sequence: | hpXppXph |
(φψ)-conformation: | bbaababb |
Pattern: | [CFIT] | [AVWY] | [AGV] | [CV] | x | [LV] | [NST] | x | [EQT] | [DENS] | [DKNP] | [EHST] | [FV] | [EKT] | [FLW] |
Conservation: | -1.143 | -0.982 | -0.391 | 1.136 | -1.467 | 1.680 | 0.890 | -1.143 | 0.560 | 0.395 | -0.658 | -0.658 | 0.664 | -0.078 | 1.195 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1k5j_A_18 | 1k5j | A | 18 | 32 | IWGCELNEQNKTFEF | EEEEEE-SS--EEEE | xbbbbbbaababbxx |
1kzq_A_17 | 1kzq | A | 18 | 32 | TAAVILTPTENHFTL | EEEEEEBTTB-EEEE | bbbbbxbaababbbb |
1l6x_A_258 | 1l6x | A | 261 | 275 | CVVVDVSHEDPEVKF | EEEEEE-SSS---EE | bbbbvxxaabaxbbb |
1nlq_A_4 | 1nlq | A | 6 | 20 | FYGVTLTAESDSVTW | EEEEEE-STT-EEEE | xbbbbbbaababbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1l6x_A_258 | 1l6x | A | GALD-GALACTOSE | E - 258 |
1l6x_A_258 | 1l6x | A | GALD-GALACTOSE | V - 259 |
1l6x_A_258 | 1l6x | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 260 |
1l6x_A_258 | 1l6x | A | GALD-GALACTOSE | T - 260 |
1l6x_A_258 | 1l6x | A | NAGN-ACETYL-D-GLUCOSAMINE | V - 262 |
1l6x_A_258 | 1l6x | A | NAGN-ACETYL-D-GLUCOSAMINE | V - 264 |
1l6x_A_258 | 1l6x | A | NAGN-ACETYL-D-GLUCOSAMINE | D - 265 |
1nlq_A_4 | 1nlq | A | MGMAGNESIUM ION | A - 13 |
1nlq_A_4 | 1nlq | A | MGMAGNESIUM ION | D - 16 |
Clusters included in this Subclass |
CLUSTER: AR.4.207 |
CLUSTER: AR.6.145 |