ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.2.1

Subclass Accession number: 4087
Subclass: 6.2.1

PSSM

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 17.2 +/- 25.4
Average RMSD (Å) : 0.917 +/- 0.170

Consensus geometry

d (Å): 15

delta (°): 45-90

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	hhXhphcpXX
(φψ)-conformation:	bbppbpgpbb

Pattern:	x	[egkst]	[AFGV]	x	[anpsv]	[AIPW]	[fhkqry]	[aptv]	[gkn]	[ekqs]	[aiktv]	x	x
Conservation:	-1.000	-0.406	0.391	-0.876	-0.447	-0.446	-0.400	0.338	1.213	2.443	-0.010	-1.199	-0.601

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cdo_A_22	1cdo	A	26	38	IEVDVPHANEIRI	EEE----TTEEEE	bbbxxxxpvbbbb
1d1t_A_22	1d1t	A	26	38	IEVAPPKTKEVRI	EEE----TTEEEE	bbbpxxxxlbbxb
1e3i_A_22	1e3i	A	26	38	IEVSPPKACEVRI	EEE----TTEEEE	bbbpxxxpvbbxb
1het_A_22	1het	A	26	38	VEVAPPKAHEVRI	EEE----TTEEEE	bbbxxxxpvbbbb
1hpg_A_126	1hpg	A	126	137	.SAANAVVGQAIK	.EE----TT-EEE	.bbbxxbpvxxbb
1lpb_A_38	1lpb	A	38	50	RCALKARENSECS	EE---B-TTSEEE	bxbxxxxpvbxbb
1lvo_A_101	1lvo	A	101	112	.KFKSIKAGESFN	.EE----TT-EEE	.bbbxxbpvxxbb
1nrz_A_102	1nrz	A	105	117	IGGMAWRPGKKQL	EEEB---TT-EEE	babbxxbpgxbxa
1q2w_A_101	1q2w	A	101	113	YKFVRIQPGQTFS	EEE----TT-EEE	bbbbbxxpgxbbx
1sgp_E_126	1sgp	E	126	137	.SAANATVGMAVT	.EE----TT-EEE	.bbbxxbxvxxbb
2sfa_*_93	2sfa	-	93	104	.GAGNAYVGQTVQ	.EE----TT-EEE	.bbbxbbxvxxbb
2sga_*_126	2sga	-	126	137	.TAGNAFVGQAVQ	.EE----TT-EEE	.bbbbxbxvxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1lpb_A_38	1lpb	A	BOGB-OCTYLGLUCOSIDE	R - 38
1lpb_A_38	1lpb	A	BOGB-OCTYLGLUCOSIDE	C - 39
1lpb_A_38	1lpb	A	BOGB-OCTYLGLUCOSIDE	A - 40
1lpb_A_38	1lpb	A	BOGB-OCTYLGLUCOSIDE	L - 41
1lvo_A_101	1lvo	A	DOXDIOXANE	I - 105
1lvo_A_101	1lvo	A	DOXDIOXANE	K - 106
1lvo_A_101	1lvo	A	DOXDIOXANE	A - 107
1lvo_A_101	1lvo	A	DOXDIOXANE	S - 110
1lvo_A_101	1lvo	A	DOXDIOXANE	F - 111
1lvo_A_101	1lvo	A	DOXDIOXANE	N - 112
1lvo_A_101	1lvo	A	DOXDIOXANE	A - 115
1lvo_A_101	1lvo	A	DOXDIOXANE	C - 116
1lvo_A_101	1lvo	A	DOXDIOXANE	Y - 117
1q2w_A_101	1q2w	A	MPD2-METHYL-2,4-PENTANEDIOL	Q - 107
1q2w_A_101	1q2w	A	MPD2-METHYL-2,4-PENTANEDIOL	P - 108
1q2w_A_101	1q2w	A	MPD2-METHYL-2,4-PENTANEDIOL	G - 109
1q2w_A_101	1q2w	A	MPD2-METHYL-2,4-PENTANEDIOL	Q - 110

Clusters included in this Subclass

CLUSTER: AR.7.17