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Information on 1lvo
PDB: 1lvo
Compound: replicase, hydrolase domain
Classification: HYDROLASE
Entry date in PDB: 2002-07-17
Resolution [Å]: 1.96
R-Factor: 0.210


CHAIN: A
SWISS-PROT/TREMBL: Q9IW06
   KEYWORD: 3D-structure    ATP-binding    Helicase    Hydrolase    Metal-binding    Polyprotein    Repeat    Ribosomal frameshift    RNA-directed RNA polymerase    Thiol protease    Transferase    Transmembrane    Zinc    Zinc-finger   
EC: 2.7.7.48
SCOP: b.47.1.4 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Viral cysteine protease of trypsin fold    Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)    Transmissible gastroenteritis virus
GO:  ATP binding    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    transcription    viral genome replication    viral life cycle    viral protein processing   


CHAIN: B
SWISS-PROT/TREMBL: Q9IW06
   KEYWORD: 3D-structure    ATP-binding    Helicase    Hydrolase    Metal-binding    Polyprotein    Repeat    Ribosomal frameshift    RNA-directed RNA polymerase    Thiol protease    Transferase    Transmembrane    Zinc    Zinc-finger   
EC: 2.7.7.48
SCOP: b.47.1.4 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Viral cysteine protease of trypsin fold    Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)    Transmissible gastroenteritis virus
GO:  ATP binding    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    transcription    viral genome replication    viral life cycle    viral protein processing   


CHAIN: C
SWISS-PROT/TREMBL: Q9IW06
   KEYWORD: 3D-structure    ATP-binding    Helicase    Hydrolase    Metal-binding    Polyprotein    Repeat    Ribosomal frameshift    RNA-directed RNA polymerase    Thiol protease    Transferase    Transmembrane    Zinc    Zinc-finger   
EC: 2.7.7.48
SCOP: b.47.1.4 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Viral cysteine protease of trypsin fold    Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)    Transmissible gastroenteritis virus
GO:  ATP binding    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    transcription    viral genome replication    viral life cycle    viral protein processing   


CHAIN: D
SWISS-PROT/TREMBL: Q9IW06
   KEYWORD: 3D-structure    ATP-binding    Helicase    Hydrolase    Metal-binding    Polyprotein    Repeat    Ribosomal frameshift    RNA-directed RNA polymerase    Thiol protease    Transferase    Transmembrane    Zinc    Zinc-finger   
EC: 2.7.7.48
SCOP: b.47.1.4 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Viral cysteine protease of trypsin fold    Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)    Transmissible gastroenteritis virus
GO:  ATP binding    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    transcription    viral genome replication    viral life cycle    viral protein processing   


CHAIN: E
SWISS-PROT/TREMBL: Q9IW06
   KEYWORD: 3D-structure    ATP-binding    Helicase    Hydrolase    Metal-binding    Polyprotein    Repeat    Ribosomal frameshift    RNA-directed RNA polymerase    Thiol protease    Transferase    Transmembrane    Zinc    Zinc-finger   
EC: 2.7.7.48
SCOP: b.47.1.4 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Viral cysteine protease of trypsin fold    Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)    Transmissible gastroenteritis virus
GO:  ATP binding    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    transcription    viral genome replication    viral life cycle    viral protein processing   


CHAIN: F
SWISS-PROT/TREMBL: Q9IW06
   KEYWORD: 3D-structure    ATP-binding    Helicase    Hydrolase    Metal-binding    Polyprotein    Repeat    Ribosomal frameshift    RNA-directed RNA polymerase    Thiol protease    Transferase    Transmembrane    Zinc    Zinc-finger   
EC: 2.7.7.48
SCOP: b.47.1.4 All beta proteins    Trypsin-like serine proteases    Trypsin-like serine proteases    Viral cysteine protease of trypsin fold    Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2)    Transmissible gastroenteritis virus
GO:  ATP binding    RNA binding    RNA helicase activity    RNA-directed RNA polymerase activity    transcription    viral genome replication    viral life cycle    viral protein processing   
1lvo Image
Image Source: PDB

Stored Loops of 1lvo

Loops in ArchDB95 clusters

1lvo_A_101 - AR => SUBCLASS : 6.2.1
1lvo_A_248 - HH => SUBCLASS : 3.4.1
1lvo_A_66 - HA => SUBCLASS : 2.3.1
1lvo_A_76 - HA => SUBCLASS : 2.3.1
1lvo_A_17 - HA => SUBCLASS : 2.3.3
1lvo_A_155 - HA => SUBCLASS : 5.4.10

Loops in ArchDB-EC clusters

1lvo_A_248 - HH => SUBCLASS : 3.1.1

Loops not clustered in ArchDB

1lvo_A_85 - AR
1lvo_A_72 - AR
1lvo_A_120 - AR
1lvo_A_120 - AR
1lvo_A_85 - AR
1lvo_A_101 - AR
1lvo_A_72 - AR
1lvo_A_35 - EH
1lvo_A_171 - EH
1lvo_A_110 - HA
1lvo_A_76 - HA
1lvo_A_147 - HA
1lvo_A_66 - HA
1lvo_A_25 - HA
1lvo_A_17 - HA
1lvo_A_147 - HA
1lvo_A_110 - HA
1lvo_A_25 - HA
1lvo_A_155 - HA
1lvo_A_53 - HE
1lvo_A_258 - HH
1lvo_A_226 - HH
1lvo_A_200 - HH

Homologous structures to 1lvo classified in ArchDB

1lvo A - percentage of sequence identity: 100
1lvo B - percentage of sequence identity: 100
1lvo C - percentage of sequence identity: 100
1lvo D - percentage of sequence identity: 100
1lvo E - percentage of sequence identity: 100
1lvo F - percentage of sequence identity: 100
1p9s A - percentage of sequence identity: 61
1p9s B - percentage of sequence identity: 61
1p9u A - percentage of sequence identity: 100
1p9u B - percentage of sequence identity: 100
1p9u C - percentage of sequence identity: 100
1p9u D - percentage of sequence identity: 100
1p9u E - percentage of sequence identity: 100
1p9u F - percentage of sequence identity: 100
2amp A - percentage of sequence identity: 100
2amp B - percentage of sequence identity: 100