ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 19.4.1

Subclass Accession number: 4333
Subclass: 19.4.1

Type: AR beta-beta link
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
GO : GO:0003676 (>75 %) GO:0003677 (>75 %) GO:0003723 (>75 %) GO:0003964 (>75 %) GO:0004175 (>75 %) GO:0004190 (>75 %) GO:0004518 (>75 %) GO:0004519 (>75 %) GO:0004540 (>75 %) GO:0008233 (>75 %) GO:0008270 (>50 %) GO:0008907 (>50 %) GO:0016772 (>75 %) GO:0016779 (>75 %) GO:0016788 (>75 %)
SCOP : 56671 (>75 %) 56672 (>75 %) 56686 (>75 %)

Number of loops: 3

Average sequence ID (%) : 54.3 +/- 4.3
Average RMSD (Å) : 0.400 +/- 0.100

Consensus geometry

d (Å): 31

delta (°): 0-45

theta (°): 45-90

rho (°): 180-225

Consensus Sequence:	LDhcDAhFXhXLpXpXpXhXAFp
(φψ)-conformation:	bbpplaaaabpppaaaaaaapbb

Pattern:	[RSW]	[IVY]	[T]	[V]	[L]	[D]	[LV]	[GK]	[D]	[A]	[FY]	[F]	[CS]	[ILV]	[PR]	[L]	[DH]	[EP]	[DT]	x	[QR]	[KP]	[LY]	[FT]	[A]	[F]	[ET]
Conservation:	-1.746	-0.945	1.095	0.439	0.439	1.750	-0.537	-0.989	1.750	0.439	0.968	1.750	-0.505	-0.435	-0.795	0.439	0.063	-0.584	-0.663	-1.125	-0.207	-0.282	-0.606	-1.046	0.439	1.750	-0.857

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1mml_*_145	1mml	-	145	171	WYTVLDLKDAFFCLRLHPTSQPLFAFE	EEEEEEBTTGGGGSBB-TTTGGGG-EE	bbbbbbxxlaaaaxxxxaaaaaaaxbx
1mu2_A_105	1mu2	A	105	131	RITVLDVGDAYFSIPLHEDFRPYTAFT	EEEEEE-BSSGGGSB--TTTGGGG-EE	bbbbbbxxlaaaabxxpaaaaaaapbb
1vrt_A_105	1vrt	A	105	131	SVTVLDVGDAYFSVPLDEDFRKYTAFT	EEEEEE-BSTGGGSB--TTTGGGG-EE	bbbbbxxblaaaabxbpaaaaaaaxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1vrt_A_105	1vrt	A	NEVNEVIRAPINE	V - 106

Clusters included in this Subclass